View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_high_29 (Length: 394)

Name: NF15299_high_29
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_high_29
NF15299_high_29
[»] chr1 (8 HSPs)
chr1 (9-377)||(30827016-30827370)
chr1 (9-74)||(33160702-33160767)
chr1 (9-75)||(29658801-29658867)
chr1 (9-75)||(29691316-29691382)
chr1 (9-75)||(29718828-29718894)
chr1 (81-163)||(29659026-29659108)
chr1 (11-68)||(19468340-19468397)
chr1 (81-149)||(29719053-29719121)
[»] chr6 (2 HSPs)
chr6 (10-69)||(6594446-6594505)
chr6 (274-342)||(21291473-21291541)
[»] chr5 (2 HSPs)
chr5 (274-342)||(3754378-3754446)
chr5 (274-342)||(14637273-14637341)
[»] chr4 (5 HSPs)
chr4 (274-342)||(7649948-7650016)
chr4 (9-77)||(10634273-10634341)
chr4 (12-71)||(55908567-55908626)
chr4 (11-75)||(570542-570606)
chr4 (274-342)||(11993954-11994022)
[»] chr3 (2 HSPs)
chr3 (215-342)||(51601009-51601135)
chr3 (274-342)||(29027195-29027263)
[»] chr2 (1 HSPs)
chr2 (12-71)||(1037503-1037562)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 30827370 - 30827016
Alignment:
Q  9 gagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgtactgatgtcacagagaagggagcgaatcatgt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30827370 gagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgtacggatgtcacagagaagggagcgaatcatgt 30827271  T
Q  109 cgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtgcaaaatcaaagttggaagaagttgaagtagttgtgtcacaagctg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827270 cgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtgcaaaatcaaagttggaagaagttgaagtagttgtgtcacaagctg 30827171  T
Q  209 ctagtattaccaaatatctttataatcatttgttatgccttgtatttgatgagaaagcatacaggtggaagagaaatccttcgtcctgcaacaactcggt 308  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||             ||||||||||| |||||||||    
T  30827170 ctagtattactaaatatctttataatca-ttgttatgccttgtatttgatgagaaagcatacaggt-------------ttcgtcctgcaccaactcggt 30827085  T
Q  309 ttgctactaatttcattgctttgcaaagtattttagctcaaaagaattcctcaagaggcatggtaacat 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827084 ttgctactaatttcattgctttgcaaagtattttagctcaaaagaattcctcaagaggcatggtaacat 30827016  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 33160767 - 33160702
Alignment:
Q  9 gagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctatt 74  Q
    |||||||||||||| |||||||| |||  || ||||||||||||||||||||||||||||||||||    
T  33160767 gagatgaaaacatcgtattgtttcctttcatgttccccaatttggaggtgcttgatttgagctatt 33160702  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 29658801 - 29658867
Alignment:
Q  9 gagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 75  Q
    ||||| |||||||| |||||||| |||| ||||||||||| ||||| ||||||||||||||||||||    
T  29658801 gagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagctattg 29658867  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 29691316 - 29691382
Alignment:
Q  9 gagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 75  Q
    ||||| |||||||  |||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  29691316 gagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattg 29691382  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 29718828 - 29718894
Alignment:
Q  9 gagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 75  Q
    ||||| |||||||  |||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  29718828 gagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattg 29718894  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 29659026 - 29659108
Alignment:
Q  81 atgtcacagagaagggagcgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtg 163  Q
    ||||||||||||| ||||  || ||||| |||||||| ||||| ||||| |  ||||||||| |||||| |||||||||||||    
T  29659026 atgtcacagagaatggagtaaaacatgtggttcaaaactgcacgcaactgactgagatcaatttgagatattgtgatcaagtg 29659108  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 19468340 - 19468397
Alignment:
Q  11 gatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttga 68  Q
    |||||||||||| || ||||| |||| ||||| ||||||||| || ||||||||||||    
T  19468340 gatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttga 19468397  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 29719053 - 29719121
Alignment:
Q  81 atgtcacagagaagggagcgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagat 149  Q
    ||||||||||||| |||| ||| ||||| |||||||| ||||  ||||| | |||||||||| ||||||    
T  29719053 atgtcacagagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttgagat 29719121  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 6594446 - 6594505
Alignment:
Q  10 agatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgag 69  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||    
T  6594446 agatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 21291541 - 21291473
Alignment:
Q  274 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 342  Q
    ||||||||| || |||||||||||  ||||||| ||||| |||||||||||||||||||| ||||||||    
T  21291541 tggaagagagatacttcgtcctgctccaactcgctttgccactaatttcattgctttgcagagtatttt 21291473  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 3754446 - 3754378
Alignment:
Q  274 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 342  Q
    ||||||||| || |||||||||||  ||||||| ||||| |||||||||||||||||||| ||||||||    
T  3754446 tggaagagagatacttcgtcctgctccaactcgctttgccactaatttcattgctttgcagagtatttt 3754378  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 14637341 - 14637273
Alignment:
Q  274 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 342  Q
    ||||||||| || |||||||||||  ||||||| ||||| |||||||||||||||||||| ||||||||    
T  14637341 tggaagagagatacttcgtcctgctccaactcgctttgccactaatttcattgctttgcagagtatttt 14637273  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 7650016 - 7649948
Alignment:
Q  274 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 342  Q
    ||||||||| || |||||||||||  ||||||| ||||| |||||||||||||||||||| ||||||||    
T  7650016 tggaagagagatacttcgtcctgctccaactcgctttgccactaatttcattgctttgcagagtatttt 7649948  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 10634273 - 10634341
Alignment:
Q  9 gagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgta 77  Q
    |||||||| ||||| | ||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||    
T  10634273 gagatgaacacatcatgttgtttacttccatttttcccaacttggacgtgctggatttgagttattgta 10634341  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 55908567 - 55908626
Alignment:
Q  12 atgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagct 71  Q
    ||||||||||| |||||||| |||| ||||||||||||||| |  | |||||||||||||    
T  55908567 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 55908626  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 570606 - 570542
Alignment:
Q  11 gatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 75  Q
    |||||||||||  || ||||| |||||||||||||||||||| || | |||||||| || |||||    
T  570606 gatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattg 570542  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 11993954 - 11994022
Alignment:
Q  274 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 342  Q
    ||||||| ||||  |||||| |||  ||||||| ||||| |||||||||||||||||| | ||||||||    
T  11993954 tggaagataaatatttcgtcttgctccaactcgctttgccactaatttcattgctttgtagagtatttt 11994022  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 342
Target Start/End: Complemental strand, 51601135 - 51601009
Alignment:
Q  215 ttaccaaatatctttataatcatttgttatgccttgtatttgatgagaaagcatacaggtggaagagaaatccttcgtcctgcaacaactcggtttgcta 314  Q
    ||||||| ||| | |||||||||| ||||| | |||||||||||||| ||   |||   ||||||||| || ||| |||||||  ||||||| ||||| |    
T  51601135 ttaccaagtatgtatataatcatt-gttatccattgtatttgatgaggaaatttactcatggaagagagatactttgtcctgctccaactcgctttgcca 51601037  T
Q  315 ctaatttcattgctttgcaaagtatttt 342  Q
    ||||||||||||||||||| ||||||||    
T  51601036 ctaatttcattgctttgcagagtatttt 51601009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 29027263 - 29027195
Alignment:
Q  274 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 342  Q
    ||||||||| || |||||||||||  ||||||| ||||| | |||||||||||||||||| ||||||||    
T  29027263 tggaagagagatacttcgtcctgctccaactcgctttgccagtaatttcattgctttgcagagtatttt 29027195  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 1037503 - 1037562
Alignment:
Q  12 atgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagct 71  Q
    ||||||||||| |||||||| |||| ||||||||||||||| |  | |||||||||||||    
T  1037503 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 1037562  T

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