View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_high_31 (Length: 369)
Name: NF15299_high_31
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_31 |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 118 - 263
Target Start/End: Original strand, 36011206 - 36011351
Alignment:
| Q |
118 |
ttgaagttgcataaattgaaacattcaaacctatcgtatgaaaaatgggtatgaatccacttcctttgagttagaatcaaagatataagaaaaaggaatt |
217 |
Q |
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| T |
36011206 |
ttgaagttgcataaattgaaacattcaaacctatcgtatgaaaaatgggtatgaatccacttcctttgagttagaatcaaagatataagaaaagggaatt |
36011305 |
T |
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| Q |
218 |
ggatttctttgagacttaacactctctgggtcaatcgaactcaatt |
263 |
Q |
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| T |
36011306 |
ggatttctttgagacttaacactctctgggtcaatcgaactcaatt |
36011351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 19664 - 19519
Alignment:
| Q |
118 |
ttgaagttgcataaattgaaacattcaaacctatcgtatgaaaaatgggtatgaatccacttcctttgagttagaatcaaagatataagaaaaaggaatt |
217 |
Q |
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| T |
19664 |
ttgaagttgcataaattgaaccattcaaacatatcgtatgaaaaatgagtatgaatccacttcctttgagttagaatcaaagatataagaaaaaggaatt |
19565 |
T |
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| Q |
218 |
ggatttctttgagacttaacactctctgggtcaatcgaactcaatt |
263 |
Q |
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| T |
19564 |
ggatttctttgagatttaacactctctgggtcaatcgaactcaatt |
19519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 37735859 - 37735714
Alignment:
| Q |
118 |
ttgaagttgcataaattgaaacattcaaacctatcgtatgaaaaatgggtatgaatccacttcctttgagttagaatcaaagatataagaaaaaggaatt |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37735859 |
ttgaagttacataaattgaaacattcaaacctatcgtatgaaaaatgggtatgaatccacttcctttgagttagaatcaaagatataagaaaaaggaatt |
37735760 |
T |
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| Q |
218 |
ggatttctttgagacttaacactctctgggtcaatcgaactcaatt |
263 |
Q |
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| T |
37735759 |
agatttctttgagatttaacactccctgtgtcaatcgaactcaatt |
37735714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 118 - 256
Target Start/End: Complemental strand, 29103847 - 29103708
Alignment:
| Q |
118 |
ttgaagttgcataaattgaaacattcaaacctat--cgtatgaaaaatgggtatgaatccacttcctttgagttagaatcaaagatataagaaaaaggaa |
215 |
Q |
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|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29103847 |
ttgaagatgcataaactgaaacattcaaacctatttcgtatgaaaaatgggtatgaatccacttcctttgagttagaatcgaagatataagaaaaaggaa |
29103748 |
T |
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| Q |
216 |
ttggatttctttgagacttaacactctctgggtcaatcgaa |
256 |
Q |
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| T |
29103747 |
ttggatttctttgaga-ttaacactctctgcgtcaatcgaa |
29103708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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