View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_high_33 (Length: 360)

Name: NF15299_high_33
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_high_33
NF15299_high_33
[»] chr1 (3 HSPs)
chr1 (1-341)||(28341226-28341566)
chr1 (3-62)||(23233999-23234058)
chr1 (3-57)||(41998396-41998450)
[»] chr8 (4 HSPs)
chr8 (6-57)||(13105142-13105193)
chr8 (3-57)||(34873134-34873188)
chr8 (3-57)||(36035147-36035201)
chr8 (7-52)||(26261255-26261300)
[»] chr7 (1 HSPs)
chr7 (1-55)||(25672368-25672422)
[»] chr5 (3 HSPs)
chr5 (10-51)||(19647373-19647414)
chr5 (3-52)||(30208974-30209023)
chr5 (9-57)||(36422549-36422597)
[»] chr4 (2 HSPs)
chr4 (3-67)||(42381071-42381135)
chr4 (3-67)||(47929293-47929357)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 28341226 - 28341566
Alignment:
Q  1 aaggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagctatagctactatgatgatgtgggaaatagggtgtttaattttaa 100  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341226 aaggtcggggttcaaacctcaggtaccccacttctccacatttaaaatgtgtaagctatagctactatgatgatgtgggaaatagggtgtttaattttaa 28341325  T
Q  101 cattgaaacctttcaggatgataaagttagtaatggaaaaattggtatgaaggttattatggttgatgtaaggagaagtttctgctatgataaggttgat 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341326 cattgaaacctttcaagatgataaagttagtaatggaaaaattggtatgaaggttattatggttgatgtaaggagaagtttctgctatgataaggttgat 28341425  T
Q  201 agtaaaattaggtttgatggctctattgttgaatctattttggtttttgcaataccaaatgacagagatgcaattggtgatggtagcaaaaatgaaatat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341426 agtaaaattaggtttgatggctctattgttgaatctattttggtttttgcaataccaaatgacagagatgcaattggtgatggtagcaaaaatgaaatat 28341525  T
Q  301 ttgcattgatgtgaccaatttctattgcaaagtttcaagac 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28341526 ttgcattgatgtgaccaatttctattgcaaagtttcaagac 28341566  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 23233999 - 23234058
Alignment:
Q  3 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagctatagc 62  Q
    |||||||||||||||| |||  ||||||||||| |||||||| ||||||| |||| ||||    
T  23233999 ggtcggggttcgaaccccagacaccctacttctccacatttataatgtgtgagctctagc 23234058  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 41998396 - 41998450
Alignment:
Q  3 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 57  Q
    ||||||||||||||||  ||  ||||||||||| |||||||||||||||| ||||    
T  41998396 ggtcggggttcgaaccctagacaccctacttctccacatttaaaatgtgtgagct 41998450  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 13105142 - 13105193
Alignment:
Q  6 cggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 57  Q
    |||||||||||||||||  |||| |||||| |||||||||||||||| ||||    
T  13105142 cggggttcgaacctcagacaccccacttctccacatttaaaatgtgtgagct 13105193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 34873134 - 34873188
Alignment:
Q  3 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 57  Q
    |||||||||||||||||| |  |||| |||||| |||||||||||||||| ||||    
T  34873134 ggtcggggttcgaacctcggacaccccacttctccacatttaaaatgtgtgagct 34873188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 36035201 - 36035147
Alignment:
Q  3 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 57  Q
    |||||||||||||||||| |  |||| |||||| |||||||||||||||| ||||    
T  36035201 ggtcggggttcgaacctcggacaccccacttctccacatttaaaatgtgtgagct 36035147  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 26261300 - 26261255
Alignment:
Q  7 ggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgt 52  Q
    |||||||||||||||| || || |||||||||| ||||||||||||    
T  26261300 ggggttcgaacctcagatatcccacttcttcacgtttaaaatgtgt 26261255  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25672422 - 25672368
Alignment:
Q  1 aaggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaag 55  Q
    ||||| || |||| ||||||||  |||||||||||||||||||| ||||||||||    
T  25672422 aaggttggagttcaaacctcagacaccctacttcttcacatttataatgtgtaag 25672368  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 19647414 - 19647373
Alignment:
Q  10 gttcgaacctcaggtaccctacttcttcacatttaaaatgtg 51  Q
    ||||||||||| | ||||||||||||||| ||||||||||||    
T  19647414 gttcgaacctcggataccctacttcttcatatttaaaatgtg 19647373  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 30209023 - 30208974
Alignment:
Q  3 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgt 52  Q
    |||||||||||||||||| || |||| |||||| || |||||||||||||    
T  30209023 ggtcggggttcgaacctcgggcaccccacttctccatatttaaaatgtgt 30208974  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 36422549 - 36422597
Alignment:
Q  9 ggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagct 57  Q
    |||||||||||||| ||| ||||||||||||||| || |||||| ||||    
T  36422549 ggttcgaacctcagatacactacttcttcacattaaatatgtgtgagct 36422597  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 42381135 - 42381071
Alignment:
Q  3 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagctatagctacta 67  Q
    ||||||||||||||||||||  |||| |||||| |||| ||||| ||||| |||| |||| ||||    
T  42381135 ggtcggggttcgaacctcagacaccccacttctccacaattaaattgtgtgagctttagccacta 42381071  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 47929293 - 47929357
Alignment:
Q  3 ggtcggggttcgaacctcaggtaccctacttcttcacatttaaaatgtgtaagctatagctacta 67  Q
    ||||| |||||||||||| |  |||| |||||| |||||||||||||||| |||| |||| ||||    
T  47929293 ggtcgaggttcgaacctcggaaaccccacttctccacatttaaaatgtgtgagctctagccacta 47929357  T

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