View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_high_36 (Length: 328)

Name: NF15299_high_36
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_high_36
NF15299_high_36
[»] chr7 (14 HSPs)
chr7 (215-328)||(47684600-47684713)
chr7 (69-190)||(47684315-47684433)
chr7 (14-68)||(47684230-47684284)
chr7 (14-129)||(46880971-46881086)
chr7 (17-131)||(12007071-12007185)
chr7 (14-130)||(15325526-15325642)
chr7 (20-142)||(45419935-45420057)
chr7 (16-129)||(32777594-32777707)
chr7 (8-129)||(43807700-43807821)
chr7 (19-127)||(33057453-33057561)
chr7 (17-131)||(27570415-27570529)
chr7 (8-126)||(43081780-43081898)
chr7 (17-101)||(3148798-3148882)
chr7 (20-56)||(5068587-5068623)
[»] chr2 (12 HSPs)
chr2 (17-131)||(26480975-26481089)
chr2 (8-126)||(30831817-30831935)
chr2 (8-132)||(31578497-31578621)
chr2 (8-101)||(37003673-37003766)
chr2 (8-129)||(44239099-44239220)
chr2 (8-83)||(19916718-19916793)
chr2 (16-127)||(18510746-18510857)
chr2 (8-130)||(11965856-11965978)
chr2 (39-129)||(1079010-1079100)
chr2 (7-73)||(8427614-8427680)
chr2 (29-138)||(14871955-14872064)
chr2 (20-56)||(1907724-1907760)
[»] chr5 (6 HSPs)
chr5 (7-129)||(16971987-16972109)
chr5 (23-131)||(11954509-11954617)
chr5 (16-127)||(42446180-42446291)
chr5 (39-129)||(611958-612048)
chr5 (17-130)||(17097689-17097801)
chr5 (91-132)||(32872782-32872823)
[»] chr1 (9 HSPs)
chr1 (8-130)||(4213135-4213257)
chr1 (16-125)||(7918953-7919062)
chr1 (8-129)||(38878788-38878909)
chr1 (20-129)||(48858898-48859007)
chr1 (39-83)||(24806157-24806201)
chr1 (20-55)||(17652703-17652738)
chr1 (67-129)||(5771631-5771693)
chr1 (20-130)||(47642493-47642603)
chr1 (8-130)||(48983554-48983676)
[»] chr4 (14 HSPs)
chr4 (20-129)||(55266100-55266209)
chr4 (8-131)||(5386435-5386558)
chr4 (7-130)||(50050699-50050821)
chr4 (58-128)||(21014110-21014180)
chr4 (8-130)||(39158168-39158290)
chr4 (16-127)||(41262234-41262345)
chr4 (8-130)||(51255809-51255931)
chr4 (7-130)||(19651805-19651928)
chr4 (39-131)||(22813607-22813699)
chr4 (20-130)||(18316012-18316122)
chr4 (8-130)||(38519856-38519978)
chr4 (8-129)||(26600086-26600207)
chr4 (20-85)||(51577689-51577754)
chr4 (8-56)||(50608585-50608633)
[»] scaffold0432 (1 HSPs)
scaffold0432 (8-135)||(6401-6528)
[»] chr6 (5 HSPs)
chr6 (29-130)||(1286997-1287098)
chr6 (15-130)||(11635421-11635536)
chr6 (19-129)||(17182172-17182282)
chr6 (8-129)||(8645371-8645492)
chr6 (20-56)||(25142511-25142547)
[»] chr3 (14 HSPs)
chr3 (10-131)||(27168567-27168688)
chr3 (14-130)||(33472305-33472421)
chr3 (8-125)||(38671680-38671797)
chr3 (8-130)||(41443077-41443199)
chr3 (16-130)||(31104735-31104849)
chr3 (8-129)||(34307428-34307549)
chr3 (20-121)||(9692800-9692901)
chr3 (20-129)||(34456865-34456974)
chr3 (8-48)||(34064074-34064114)
chr3 (24-131)||(29525942-29526049)
chr3 (20-130)||(4494123-4494233)
chr3 (17-131)||(32145871-32145985)
chr3 (8-56)||(23868939-23868987)
chr3 (20-56)||(50314699-50314735)
[»] chr8 (11 HSPs)
chr8 (8-129)||(42652658-42652777)
chr8 (8-128)||(36874001-36874119)
chr8 (16-129)||(9630194-9630307)
chr8 (15-132)||(33451449-33451565)
chr8 (8-129)||(44090949-44091070)
chr8 (10-54)||(11134661-11134705)
chr8 (8-130)||(25987673-25987795)
chr8 (20-52)||(5574330-5574362)
chr8 (7-130)||(15716862-15716985)
chr8 (16-129)||(37172131-37172244)
chr8 (16-52)||(45405948-45405984)
[»] scaffold0201 (1 HSPs)
scaffold0201 (16-129)||(8543-8656)
[»] scaffold0184 (1 HSPs)
scaffold0184 (17-129)||(13444-13556)
[»] scaffold0078 (1 HSPs)
scaffold0078 (17-129)||(59288-59400)
[»] scaffold0618 (1 HSPs)
scaffold0618 (8-129)||(8840-8961)
[»] scaffold0110 (1 HSPs)
scaffold0110 (8-48)||(28295-28335)
[»] scaffold0041 (1 HSPs)
scaffold0041 (20-52)||(10928-10960)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 215 - 328
Target Start/End: Original strand, 47684600 - 47684713
Alignment:
Q  215 ggaaatattgattattattgtgtaatttattgaagtagaacgggtatcatatttccctgtcaatatagtaaatcatcacgtgacctaacctaggttttga 314  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47684600 ggaaatatagattattattgtgtaatttattgaagtagaacgggtatcatatttccctgtcaatatagtaaatcatcacgtgacctaacctaggttttga 47684699  T
Q  315 gagggaggaaggga 328  Q
    ||||||||||||||    
T  47684700 gagggaggaaggga 47684713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 47684315 - 47684433
Alignment:
Q  69 ttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaataacattgctctattaataaatttatttgtattttcctcctcatg-tttt 167  Q
    ||||||||||| ||||||||||||||||||||| ||||  |||||    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47684315 ttatataatttggttgtatgagaagttgtcacagtaaaagattgt----ataacattgctctattaataaatttatttgtattttcctcctcatgttttt 47684410  T
Q  168 ctttgtcgtctaaaatatagatt 190  Q
     |||||||||| |||||||||||    
T  47684411 ttttgtcgtctgaaatatagatt 47684433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 47684230 - 47684284
Alignment:
Q  14 ttcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccct 68  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47684230 ttcttatactttctttctctattattttgatttttgtgtcaatgtctaaatccct 47684284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 46880971 - 46881086
Alignment:
Q  14 ttcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgt 113  Q
    |||||||||| ||| ||||||||| ||||||||||  | || | |||||||  | || |||||||| ||||||| | || |||||| |||||||  ||||    
T  46880971 ttcttctactatctctctctattactttgattttttcgccactatctaaatgtcgttgtataatttggttgtataaaaaattgtcataataaagggttgt 46881070  T
Q  114 tcaaataacattgctc 129  Q
    ||||||||||||||||    
T  46881071 tcaaataacattgctc 46881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 12007185 - 12007071
Alignment:
Q  17 ttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttca 116  Q
    ||||||||||| ||||||||  ||||||||||||| || | |||||||  |||| || ||||| |||||   | ||||||||||||||||   |||| ||    
T  12007185 ttctactttctctctctattgctttgatttttgtgccactatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatagttgtaca 12007086  T
Q  117 aataacattgctcta 131  Q
    |||||||||||||||    
T  12007085 aataacattgctcta 12007071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 15325642 - 15325526
Alignment:
Q  14 ttcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgt 113  Q
    |||||||||||||| |||||||| |||| |||||||||||| | |||||||   ||| |||||| | |||||   | |||||||||||  |||   ||||    
T  15325642 ttcttctactttctctctctattgtttttatttttgtgtcactatctaaatttttttgtataatgtggttgtccaacaagttgtcacataaaaaggttgt 15325543  T
Q  114 tcaaataacattgctct 130  Q
    |||||||||||||||||    
T  15325542 tcaaataacattgctct 15325526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 45420057 - 45419935
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaat 119  Q
    |||||||| |||||||| |||||||||||||| || |  ||||||  |||| ||||||||||||||   | | ||||||| || |||   ||||||||||    
T  45420057 tactttctctctctattgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcaaaagaaatggttgttcaaat 45419958  T
Q  120 aacattgctctattaataaattt 142  Q
    || ||||||||||| || |||||    
T  45419957 aatattgctctatttattaattt 45419935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 32777707 - 32777594
Alignment:
Q  16 cttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttc 115  Q
    |||||||||||| |||| |||| ||||||||||||| || |  ||||||  |||| |||||||| |||||   | ||||| | |||| |||  |||||||    
T  32777707 cttctactttctctctccattactttgatttttgtgccactacctaaatttctttgtataatttggttgtccaacaagttattacaagaaaagattgttc 32777608  T
Q  116 aaataacattgctc 129  Q
    ||||||||||||||    
T  32777607 aaataacattgctc 32777594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 43807821 - 43807700
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| ||||| |||||||| | ||||||| |||||||||||||||| |   |||||  |||| |||||||| ||||||  | || |||||| || ||||    
T  43807821 acattgttcttttactttctctttctattaatttgatttttgtgtcactacttaaatgtctttgtataatttggttgtacaacaaattgtcataagaaag 43807722  T
Q  108 tattgttcaaataacattgctc 129  Q
      |||||||||||||| |||||    
T  43807721 ggttgttcaaataacactgctc 43807700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 33057453 - 33057561
Alignment:
Q  19 ctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaa 118  Q
    ||||||||| ||||||||  |||||||||||||| | |  ||||||  |||| ||| |||| ||||| | | | |||||||||| |||  ||||||||||    
T  33057453 ctactttctctctctattgctttgatttttgtgttattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaagattgttcaaa 33057552  T
Q  119 taacattgc 127  Q
    |||||||||    
T  33057553 taacattgc 33057561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 27570415 - 27570529
Alignment:
Q  17 ttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttca 116  Q
    ||||||||| ||||||||||  ||||||||||||| || | || ||||  |||| || ||||| |||||   | ||||||||||||||||   |||| ||    
T  27570415 ttctactttttttctctattgctttgatttttgtgccactatcaaaatttctttgtaaaatttggttgtccaataagttgtcacaataaatagttgtaca 27570514  T
Q  117 aataacattgctcta 131  Q
     ||||||||||||||    
T  27570515 gataacattgctcta 27570529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 43081898 - 43081780
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| |||||||||||||| ||||||||  ||| || ||||||||| |  ||||||  |||| |||||| | ||||| | | || ||||||||  |||     
T  43081898 acattgttcttctactttctctctctattgctttaatatttgtgtcactacctaaatttctttgtataatgtggttgtctaacaaattgtcacataaaaa 43081799  T
Q  108 tattgttcaaataacattg 126  Q
    | |||||||||||||||||    
T  43081798 tgttgttcaaataacattg 43081780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 3148798 - 3148882
Alignment:
Q  17 ttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcaca 101  Q
    ||||||||||| ||||||||| |||||| ||||||||| | |||||||   |||||||||| | |||||   | |||||||||||    
T  3148798 ttctactttctctctctattactttgatatttgtgtcactatctaaatttatttatataatgtggttgttcaacaagttgtcaca 3148882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 5068623 - 5068587
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaat 56  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  5068623 tactttctttatctattactttgatttttgtgtcaat 5068587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 26481089 - 26480975
Alignment:
Q  17 ttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttca 116  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||| ||||||| |||||||||||||||||||  |||||||    
T  26481089 ttctactttctttctctattactttgatttttgtgtcactatctaaatccctttgtataatttggttgtataagaagttgtcacaataaagggttgttca 26480990  T
Q  117 aataacattgctcta 131  Q
    |||||||||||||||    
T  26480989 aataacattgctcta 26480975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 30831817 - 30831935
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||| || | ||||||||||||| ||||||||  |||||| ||||||||||||||||||     
T  30831817 acattgttcttctactttctctctctattactttgatttttgtgccactatctaaatccctttgtataatttgattgtataagaagttgtcacaataaat 30831916  T
Q  108 tattgttcaaataacattg 126  Q
     ||||||||||||||||||    
T  30831917 gattgttcaaataacattg 30831935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 31578497 - 31578621
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||||||||| |||||| | ||||||||  |||||||||||||||| |  ||||||  |||| ||||| ||||||||   | |||||||||||| |||     
T  31578497 acattattcttttactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtataagttagttgtccaacaagttgtcacaagaaat 31578596  T
Q  108 tattgttcaaataacattgctctat 132  Q
     |||||||||||| |||||||||||    
T  31578597 gattgttcaaatatcattgctctat 31578621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 37003673 - 37003766
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcaca 101  Q
    ||||| ||||||||| |||| ||| ||||| |||||||||| || || | |||||| |||||| |||||||| ||||||| |||||||||||||    
T  37003673 acattgttcttctacattctctctttattactttgatttttatgccactatctaaacccctttgtataatttggttgtataagaagttgtcaca 37003766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 44239099 - 44239220
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    |||||||| || || ||| | ||||||||  |||||||||||||||| || ||||||  |||| ||||||||||||||   | || |||||||||||||     
T  44239099 acattattattttattttatctctctattgctttgatttttgtgtcactgcctaaatttctttgtataatttagttgtccaaaaaattgtcacaataaat 44239198  T
Q  108 tattgttcaaataacattgctc 129  Q
      ||||||||||||||||||||    
T  44239199 ggttgttcaaataacattgctc 44239220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 19916718 - 19916793
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagtt 83  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||||| || ||||||  |||| |||||| |||||    
T  19916718 acattgttcttctactttctctctctattattttgatatttgtgtcactgcctaaatttctttgtataatgtagtt 19916793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 18510746 - 18510857
Alignment:
Q  16 cttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttc 115  Q
    |||||||||||| |||||| |  |||||||||||||||| |  ||||||  |||| ||| |||| ||||| | | | |||||||||| ||| | ||||||    
T  18510746 cttctactttctctctctacttctttgatttttgtgtcattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttc 18510845  T
Q  116 aaataacattgc 127  Q
    ||||||||||||    
T  18510846 aaataacattgc 18510857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 11965856 - 11965978
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| |||||||||||||| ||||||||  ||||||||||||| || | |||||||  || | |||||| | |||||   | |||||||||||  |||     
T  11965856 acattgttcttctactttctctctctattgctttgatttttgtgccactatctaaatttctatgtataatgtggttgtccaacaagttgtcacataaaaa 11965955  T
Q  108 tattgttcaaataacattgctct 130  Q
      |||||||||||||||||||||    
T  11965956 ggttgttcaaataacattgctct 11965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 1079100 - 1079010
Alignment:
Q  39 tttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaataacattgctc 129  Q
    |||||||||||||||| ||  |||||  |||| |||||||||||||| | | | |||||||||| |||   ||||||| ||||||||||||    
T  1079100 tttgatttttgtgtcactgcttaaatttctttgtataatttagttgtctaaaaggttgtcacaagaaatggttgttcatataacattgctc 1079010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 8427614 - 8427680
Alignment:
Q  7 tacattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttata 73  Q
    |||||||| ||| |||||||| |||||||||||||| |||| ||||||||  |||| | ||||||||    
T  8427614 tacattatacttttactttctctctctattattttggttttcgtgtcaataactaatttcctttata 8427680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 14871955 - 14872064
Alignment:
Q  29 tctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaataacattgct 128  Q
    |||||||| |||||||||||||| || |  ||||||  |||| ||||||||  |||| | | ||||||| |||| |||   |||||||||||||||| ||    
T  14871955 tctctattgttttgatttttgtgccactacctaaatttctttgtataatttgattgtctaacaagttgttacaagaaatggttgttcaaataacatttct 14872054  T
Q  129 ctattaataa 138  Q
    || |||||||    
T  14872055 cttttaataa 14872064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 1907760 - 1907724
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaat 56  Q
    |||||||| |||||||| |||||||||||||||||||    
T  1907760 tactttctctctctattgttttgatttttgtgtcaat 1907724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 16972109 - 16971987
Alignment:
Q  7 tacattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaa 106  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| ||||||||  |||||| ||||||||||||||||||    
T  16972109 tacattgttcttctactttctctctctattactttgatttttgtgtcagtctctaaatccctttgtataatttgattgtataagaagttgtcacaataaa 16972010  T
Q  107 gtattgttcaaataacattgctc 129  Q
      |||||||||||||||||||||    
T  16972009 tgattgttcaaataacattgctc 16971987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 11954509 - 11954617
Alignment:
Q  23 tttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaataac 122  Q
    ||||||||||||||| ||||||||||||| || | ||||| || |||| |||||||||||||||| ||||||||||| ||||||   |||||||||||||    
T  11954509 tttctttctctattactttgatttttgtgccactatctaagtcactttgtataatttagttgtataagaagttgtcaaaataaatggttgttcaaataac 11954608  T
Q  123 attgctcta 131  Q
    |||||||||    
T  11954609 attgctcta 11954617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 42446291 - 42446180
Alignment:
Q  16 cttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttc 115  Q
    |||||||||| | ||||||||  ||||||||||||| || |  ||||||  |||| ||| |||| ||||| | | | |||||||||| ||| | ||||||    
T  42446291 cttctactttttctctctattgctttgatttttgtgccattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttc 42446192  T
Q  116 aaataacattgc 127  Q
    ||||||||||||    
T  42446191 aaataacattgc 42446180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 129
Target Start/End: Original strand, 611958 - 612048
Alignment:
Q  39 tttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaataacattgctc 129  Q
    |||||||||||||||| |  ||||||  |||| |||||||||||||| | | | |||||||| | ||| |||| |||| ||||||||||||    
T  611958 tttgatttttgtgtcactacctaaatttctttgtataatttagttgtctaaaaggttgtcacgagaaattatttttcatataacattgctc 612048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 17097801 - 17097689
Alignment:
Q  17 ttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttca 116  Q
    ||||||||||| | ||||||| |||||||||||||||| |  |||| |  |||| ||||||||||||||   | || ||||||||| ||| |  ||||||    
T  17097801 ttctactttctctttctattactttgatttttgtgtcactacctaattttctttgtataatttagttgtccaacaaattgtcacaagaaa-tggtgttca 17097703  T
Q  117 aataacattgctct 130  Q
    ||||||||| ||||    
T  17097702 aataacattactct 17097689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 32872823 - 32872782
Alignment:
Q  91 aagttgtcacaataaagtattgttcaaataacattgctctat 132  Q
    |||||||||||| ||||  |||||||||||||||||||||||    
T  32872823 aagttgtcacaagaaagggttgttcaaataacattgctctat 32872782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 4213135 - 4213257
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| ||||||||| |||| ||||||||| |||||||||||||||| | ||||||||  |||||||||||| ||||||| |||||||||||||||||||    
T  4213135 acattgttcttctaccttctctctctattactttgatttttgtgtcactatctaaatctttttatataatttggttgtataagaagttgtcacaataaag 4213234  T
Q  108 tattgttcaaataacattgctct 130  Q
      |||||||||||||||||||||    
T  4213235 ggttgttcaaataacattgctct 4213257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 7919062 - 7918953
Alignment:
Q  16 cttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttc 115  Q
    |||||||||| | ||||||||| ||||||||||||| || |  ||||||  |||| |||||||| ||||| | | |||||||||||| ||||  ||||||    
T  7919062 cttctactttatctctctattactttgatttttgtgccactacctaaatttctttgtataatttggttgtctaacaagttgtcacaagaaagggttgttc 7918963  T
Q  116 aaataacatt 125  Q
    ||||||||||    
T  7918962 aaataacatt 7918953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 38878909 - 38878788
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| |||||||||||| | | ||||||  |||||||||||||||| |  ||||||  ||||||||||| |||||||   | |||||||||||  |||     
T  38878909 acattgttcttctactttttctttctattgctttgatttttgtgtcactacctaaatttctttatataatatagttgtccaacaagttgtcacataaaaa 38878810  T
Q  108 tattgttcaaataacattgctc 129  Q
    | ||||||||||||||||||||    
T  38878809 tgttgttcaaataacattgctc 38878788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 48858898 - 48859007
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaat 119  Q
    ||||| || ||||||||  |||||||||||||||| | |||||||  |||| ||||||||||||||   | | |||||||||| |||   ||||||| ||    
T  48858898 tacttcctctctctattgctttgatttttgtgtcactatctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttcatat 48858997  T
Q  120 aacattgctc 129  Q
    ||||||||||    
T  48858998 aacattgctc 48859007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 24806201 - 24806157
Alignment:
Q  39 tttgatttttgtgtcaatgtctaaatccctttatataatttagtt 83  Q
    |||||||||||||||| |||||||||  |||||||||||||||||    
T  24806201 tttgatttttgtgtcactgtctaaatttctttatataatttagtt 24806157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 17652703 - 17652738
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaa 55  Q
    |||||||||||||||||| |||||||||||||||||    
T  17652703 tactttctttctctattactttgatttttgtgtcaa 17652738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 5771693 - 5771631
Alignment:
Q  67 ctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaataacattgctc 129  Q
    |||| |||||||||||||| | | | |||||||||| |||  |||||||||||||||||||||    
T  5771693 ctttgtataatttagttgtctaaaaggttgtcacaagaaatgattgttcaaataacattgctc 5771631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 47642603 - 47642493
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaat 119  Q
    |||||||| | ||||||  ||| |||||||||||| | |||||||  |||| |||||||| |||||   | |||||||| ||| |||   ||||||||||    
T  47642603 tactttctctttctattgctttaatttttgtgtcactatctaaatttctttgtataatttggttgtccaacaagttgtcccaaaaaatggttgttcaaat 47642504  T
Q  120 aacattgctct 130  Q
    |||||||||||    
T  47642503 aacattgctct 47642493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 48983676 - 48983554
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    |||| ||| ||||||||||| | ||||||  ||||||||||||| || | |||||||  |||| || ||||| |||||   | ||||||||||||||||     
T  48983676 acatgattattctactttctctttctattgctttgatttttgtgccattatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaat 48983577  T
Q  108 tattgttcaaataacattgctct 130  Q
      |||| | ||||||||||||||    
T  48983576 ggttgtaccaataacattgctct 48983554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 55266100 - 55266209
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaat 119  Q
    |||||||| ||| ||||| |||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||||    
T  55266100 tactttctctctttattactttgatttttgtgtcactatctaaatccatttatataatttagttgtataagaagttatcacaataaaggattgttcaaat 55266199  T
Q  120 aacattgctc 129  Q
    ||||||||||    
T  55266200 aacattgctc 55266209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 5386435 - 5386558
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||||||||| |||||||| ||||||||  |||||||||||||| | | |||||||  |||| |||||||||||||| | | |||||||||||| |||     
T  5386435 acattattcttttactttctctctctattgctttgatttttgtgttactatctaaatttctttgtataatttagttgtctaaaaagttgtcacaagaaat 5386534  T
Q  108 tattgttcaaataacattgctcta 131  Q
      ||||||||||| ||||||||||    
T  5386535 ggttgttcaaatatcattgctcta 5386558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 50050699 - 50050821
Alignment:
Q  7 tacattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaa 106  Q
    |||||| |||||||| ||||| |||||| || |||||||||| || || | ||||||||||||| ||||| |||||||||| | ||||||||||||||||    
T  50050699 tacattgttcttcta-tttctctctctaatactttgatttttatgccactatctaaatccctttgtataacttagttgtataaaaagttgtcacaataaa 50050797  T
Q  107 gtattgttcaaataacattgctct 130  Q
       ||||||| |||||||||||||    
T  50050798 tagttgttcatataacattgctct 50050821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 21014110 - 21014180
Alignment:
Q  58 tctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaataacattgct 128  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||||||   |||||||||||||||||||    
T  21014110 tctaaatccctttgtataatttggttgtataagaagttgtcacaataaaaggttgttcaaataacattgct 21014180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 39158168 - 39158290
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    |||||||||||||||||||| | |||||| ||||| |||||||| |  |  ||||||  |||| |||||||| |||||   | ||||||||||||||||     
T  39158168 acattattcttctactttctctttctattgttttggtttttgtgccgctacctaaatttctttgtataatttggttgtccaataagttgtcacaataaat 39158267  T
Q  108 tattgttcaaataacattgctct 130  Q
      |||||||||||||||||||||    
T  39158268 ggttgttcaaataacattgctct 39158290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 41262345 - 41262234
Alignment:
Q  16 cttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttc 115  Q
    |||||||||||||||||||||  ||||||||||||| || | |||||||  |||| ||| |||| ||||| | | | |||||||||| |||   ||||||    
T  41262345 cttctactttctttctctattgctttgatttttgtgccattatctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaaggttgttc 41262246  T
Q  116 aaataacattgc 127  Q
    ||||||||||||    
T  41262245 aaataacattgc 41262234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 51255809 - 51255931
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    |||| ||| ||||||||||| ||||||||  ||||||||||||| || | |||||||  |||| || ||||| |||||   | ||||||||||||||||     
T  51255809 acatgattattctactttctctctctattgctttgatttttgtgccactatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaat 51255908  T
Q  108 tattgttcaaataacattgctct 130  Q
      |||| ||||||||||||||||    
T  51255909 ggttgtacaaataacattgctct 51255931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 19651928 - 19651805
Alignment:
Q  7 tacattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaa 106  Q
    ||||||||| || |||||| ||||||||||| |||||||||| ||||| |  ||||||  |||| ||||||||||||||   | | |||||||||| |||    
T  19651928 tacattatttttttactttatttctctattactttgatttttatgtcactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaaaaaa 19651829  T
Q  107 gtattgttcaaataacattgctct 130  Q
       ||||||||||| |||| ||||    
T  19651828 tggttgttcaaatatcattactct 19651805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 22813699 - 22813607
Alignment:
Q  39 tttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaataacattgctcta 131  Q
    |||||||||||||||| |  ||||||  |||||||||||||| ||||   | |||||||||||| |||   ||||| ||||||||||||||||    
T  22813699 tttgatttttgtgtcactacctaaatttctttatataatttaattgtccaacaagttgtcacaagaaaaagttgtttaaataacattgctcta 22813607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 18316012 - 18316122
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaat 119  Q
    |||||||| | ||||||  |||||||||||||||| |  ||||||  |||| |||||||| |||||   | ||||||||| || |||   ||||||||||    
T  18316012 tactttctctttctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaat 18316111  T
Q  120 aacattgctct 130  Q
    |||||||||||    
T  18316112 aacattgctct 18316122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 38519856 - 38519978
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    |||| ||| ||||||||||| ||||||||  ||||||||||||| || | | |||||  |||| || ||||| |||||   | ||||||||||||||||     
T  38519856 acatgattattctactttctctctctattgctttgatttttgtgccactatttaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaat 38519955  T
Q  108 tattgttcaaataacattgctct 130  Q
      || | ||||||||||||||||    
T  38519956 ggttatacaaataacattgctct 38519978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 26600207 - 26600086
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| |||||||||||||||||||||||  ||| ||| ||||| || | ||||| ||  ||| |||||| | |||||   | || ||||||||  |||     
T  26600207 acattgttcttctactttctttctctattgcttttattattgtgccactatctaattctttttgtataatgtggttgtccaacaaattgtcacataaaaa 26600108  T
Q  108 tattgttcaaataacattgctc 129  Q
    | ||||||||||||||||||||    
T  26600107 tgttgttcaaataacattgctc 26600086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 51577689 - 51577754
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgt 85  Q
    |||||||| ||||||||  ||||||||||||| || |  ||||||  |||||||||||||||||||    
T  51577689 tactttctctctctattgctttgatttttgtgccactacctaaatttctttatataatttagttgt 51577754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 50608633 - 50608585
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaat 56  Q
    |||||||| || ||||| || ||||||||| ||||||||||||||||||    
T  50608633 acattatttttttacttcctctctctattactttgatttttgtgtcaat 50608585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 6528 - 6401
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| |||| ||| ||||||| ||||||||| ||||||||     
T  6528 acattgttcttctactttctctctctattactttgatttttgtgtcactatctaaatccctttgtatagtttggttgtataagaagttgtaacaataaaa 6429  T
Q  108 tattgttcaaataacattgctctattaa 135  Q
      ||||||||||| ||||||||| ||||    
T  6428 ggttgttcaaatagcattgctcttttaa 6401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 1286997 - 1287098
Alignment:
Q  29 tctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaataacattgct 128  Q
    |||| |||| |||||||||||||||| | ||||||| | ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  1286997 tctcgattactttgatttttgtgtcactatctaaattcttttgtataatttagttgtataagaagttgtcacaataaaggattgttcaaataacattgct 1287096  T
Q  129 ct 130  Q
    ||    
T  1287097 ct 1287098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 11635536 - 11635421
Alignment:
Q  15 tcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgtt 114  Q
    ||||||| ||||| ||||||||| ||||||||||||| || | |||||||| |||| |||||||| ||||||| |||| ||||||||||||||  |||||    
T  11635536 tcttctattttctctctctattactttgatttttgtgccactatctaaatctctttgtataatttggttgtataagaaattgtcacaataaagggttgtt 11635437  T
Q  115 caaataacattgctct 130  Q
    ||||||| | ||||||    
T  11635436 caaataagactgctct 11635421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 17182172 - 17182282
Alignment:
Q  19 ctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaa 118  Q
    ||||||| | ||||||||| |||||||||| || || | ||||||||||||| ||||||||  |||||| ||||||||||| |||||||  |||||||||    
T  17182172 ctactttttctctctattactttgatttttatgccactatctaaatccctttgtataatttgattgtataagaagttgtcataataaagggttgttcaaa 17182271  T
Q  119 taacattgctc 129  Q
    |||||||||||    
T  17182272 taacattgctc 17182282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 8645371 - 8645492
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||||| ||| |||||||| ||||||||  |||||||| || |||| |  ||||||  |||| ||||||||||||||   | | |||||||||| |||     
T  8645371 acattatccttttactttctctctctattgctttgatttatgcgtcactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaat 8645470  T
Q  108 tattgttcaaataacattgctc 129  Q
      ||||||||||| ||||||||    
T  8645471 ggttgttcaaatatcattgctc 8645492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 25142547 - 25142511
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaat 56  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  25142547 tactttctttctctattagtttgattttcgtgtcaat 25142511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 27168688 - 27168567
Alignment:
Q  10 attattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagta 109  Q
    ||||||||||||||| || ||||||||| ||||||||||||| || | | ||||||||||| |||||||| ||||||| ||||||||||| |||||||      
T  27168688 attattcttctacttcctctctctattactttgatttttgtgccactatttaaatccctttgtataatttggttgtataagaagttgtcataataaaggg 27168589  T
Q  110 ttgttcaaataacattgctcta 131  Q
    ||||||||||||||||| ||||    
T  27168588 ttgttcaaataacattgttcta 27168567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 33472421 - 33472305
Alignment:
Q  14 ttcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgt 113  Q
    ||||| |||||||||| ||||||| |||||||||||| ||| | |||||||| |||| ||||||||  |||||| ||||||||||| |||||||  ||||    
T  33472421 ttcttttactttctttttctattactttgatttttgtatcactatctaaatctctttgtataatttgattgtataagaagttgtcataataaagggttgt 33472322  T
Q  114 tcaaataacattgctct 130  Q
    | |||||||||| ||||    
T  33472321 ttaaataacattactct 33472305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 38671680 - 38671797
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| ||||| |||||| ||||||||||| ||| |||||||| ||| | |||||||| |||||||||||||| ||||||  |||||| | ||||||||     
T  38671680 acattgttcttatactttatttctctattactttaatttttgtatcactatctaaatcactttatataatttaattgtataggaagttattacaataaat 38671779  T
Q  108 tattgttcaaataacatt 125  Q
      ||||||||||||||||    
T  38671780 ggttgttcaaataacatt 38671797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 41443199 - 41443077
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||  |||  ||||||  |||| ||||||||||||||   | | |||||||||| |||     
T  41443199 acattattcttttactttctctctctattgttttgatttttgtgcaaatacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaat 41443100  T
Q  108 tattgttcaaataacattgctct 130  Q
     |||||||||||| |||||||||    
T  41443099 gattgttcaaatatcattgctct 41443077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 31104735 - 31104849
Alignment:
Q  16 cttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttc 115  Q
    |||||||||||| |||||||| ||||||||||||||||| |  ||||||  |||  ||||||||||||||   | || ||||||||| |||   ||||||    
T  31104735 cttctactttctctctctattgttttgatttttgtgtcactacctaaatttcttcgtataatttagttgtcaaacaaattgtcacaagaaaaagttgttc 31104834  T
Q  116 aaataacattgctct 130  Q
    |||||||||||||||    
T  31104835 aaataacattgctct 31104849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 34307549 - 34307428
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| |||||||||||||| | ||||||  |||| ||||||| ||| |  ||||||  |||| |||||||| |||||   | |||||||||||| ||||    
T  34307549 acattgttcttctactttctctttctattgctttggtttttgtatcactacctaaatttctttgtataatttggttgtccaataagttgtcacaagaaag 34307450  T
Q  108 tattgttcaaataacattgctc 129  Q
     |||||||||||||||||||||    
T  34307449 gattgttcaaataacattgctc 34307428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 9692800 - 9692901
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaat 119  Q
    |||||||| ||||||||  |||||||||||||||| || |||| |  |||| |||||||||||||| | | | |||||||||| |||   ||||||||||    
T  9692800 tactttctctctctattgctttgatttttgtgtcactgcctaactttctttgtataatttagttgtctaaaaggttgtcacaagaaatggttgttcaaat 9692899  T
Q  120 aa 121  Q
    ||    
T  9692900 aa 9692901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 34456865 - 34456974
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaat 119  Q
    |||||||| ||||||||  ||| ||||||||| ||||  ||||||  |||| |||||||||||||| | | |  ||||||||| |||  |||||||||||    
T  34456865 tactttctctctctattgctttaatttttgtgccaatacctaaatttctttgtataatttagttgtctaaaagattgtcacaagaaataattgttcaaat 34456964  T
Q  120 aacattgctc 129  Q
    | ||||||||    
T  34456965 atcattgctc 34456974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 34064114 - 34064074
Alignment:
Q  8 acattattcttctactttctttctctattattttgattttt 48  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  34064114 acattatttttctactttctttctctattactttgattttt 34064074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 29525942 - 29526049
Alignment:
Q  24 ttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaataaca 123  Q
    |||| |||||||| |||||||||||||| || | |||||||   ||| || ||||| |||||   | ||||||||||||||||   |||| |||||||||    
T  29525942 ttctctctctattgttttgatttttgtgccactatctaaatttttttgtaaaatttggttgtccaacaagttgtcacaataaatggttgtacaaataaca 29526041  T
Q  124 ttgctcta 131  Q
    ||||||||    
T  29526042 ttgctcta 29526049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 4494233 - 4494123
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttcaaat 119  Q
    |||||||| | ||||||  |||||||||||||||| |  ||||||  |||| |||||||| |||||   | ||||||||| || |||   ||||||||||    
T  4494233 tactttctctttctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaat 4494134  T
Q  120 aacattgctct 130  Q
    |||||||||||    
T  4494133 aacattgctct 4494123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 32145985 - 32145871
Alignment:
Q  17 ttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttca 116  Q
    ||||||||||| |||||||| ||||||||||||||||| |  ||||||  |||| || |||||| || |   | |||||||| |  ||||   |||||||    
T  32145985 ttctactttctctctctattgttttgatttttgtgtcactacctaaatttctttgtaaaatttaattatccaacaagttgtccccgtaaatggttgttca 32145886  T
Q  117 aataacattgctcta 131  Q
    |||||||||||||||    
T  32145885 aataacattgctcta 32145871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 23868987 - 23868939
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaat 56  Q
    |||||||| || ||| |||||| ||||||||||||||||||||| ||||    
T  23868987 acattatttttttacgttctttttctattattttgatttttgtgccaat 23868939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 50314699 - 50314735
Alignment:
Q  20 tactttctttctctattattttgatttttgtgtcaat 56  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  50314699 tactttctctctctattactttgatttttgtgtcaat 50314735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 42652658 - 42652777
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| ||||||||| ||||  |||||||| ||| ||||| ||| || | ||||||||| |||||||||||||||||||| | |||||||||||||||||    
T  42652658 acattgttcttctacattct--ctctattactttaattttcgtgccactatctaaatccatttatataatttagttgtataaaaagttgtcacaataaag 42652755  T
Q  108 tattgttcaaataacattgctc 129  Q
      ||||||||||||||||||||    
T  42652756 agttgttcaaataacattgctc 42652777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 36874119 - 36874001
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| |||||||| |||||  |||||||||||||||||||||  || | |||||||||||||||||||||| ||||||| | || || |||||||||||    
T  36874119 acattgttcttctattttct--ctctattattttgatttttgtaccactatctaaatccctttatataatttggttgtataaaaaattatcacaataaag 36874022  T
Q  108 tattgttcaaataacattgct 128  Q
      |||||||||||||||||||    
T  36874021 ggttgttcaaataacattgct 36874001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 9630194 - 9630307
Alignment:
Q  16 cttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttc 115  Q
    |||||| ||||||||||||||  |||||||||| | ||| |  ||||||  ||||||||||||||||||| | | || ||||||||| |||   |||||     
T  9630194 cttctattttctttctctatttctttgatttttatatcactacctaaatttctttatataatttagttgtctaacaaattgtcacaaaaaatagttgttt 9630293  T
Q  116 aaataacattgctc 129  Q
    ||||||||||||||    
T  9630294 aaataacattgctc 9630307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 33451565 - 33451449
Alignment:
Q  15 tcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgtt 114  Q
    ||||||||||||| ||||||||  ||||||||||||| || |  |||| | | ||| ||||||||  |||| | | |||||||||||| ||||  |||||    
T  33451565 tcttctactttctctctctattgctttgatttttgtgccactacctaatttc-tttgtataatttgattgtctaacaagttgtcacaagaaagggttgtt 33451467  T
Q  115 caaataacattgctctat 132  Q
    ||||||||||||||||||    
T  33451466 caaataacattgctctat 33451449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 44090949 - 44091070
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| |||||||||||||| ||||||||  |||||||||||||||| |  ||||||  |||| |||||| | |||||   | |||||||||||  |||     
T  44090949 acattgttcttctactttctctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaaaaagttgtcacatgaaaa 44091048  T
Q  108 tattgttcaaataacattgctc 129  Q
      ||||||||||||||||||||    
T  44091049 ggttgttcaaataacattgctc 44091070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 11134661 - 11134705
Alignment:
Q  10 attattcttctactttctttctctattattttgatttttgtgtca 54  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||    
T  11134661 attatttttctactttctctctctattattttgatttttgtgtca 11134705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 25987795 - 25987673
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    |||||||  ||||||||| | ||||||||  |||||||||||||||| |  ||||||  |||| ||||||||||||||   | | |||||||||| |||     
T  25987795 acattatcattctactttatctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttagttgttcaaaaggttgtcacaagaaat 25987696  T
Q  108 tattgttcaaataacattgctct 130  Q
      |||||||||||||||| ||||    
T  25987695 ggttgttcaaataacattactct 25987673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 5574330 - 5574362
Alignment:
Q  20 tactttctttctctattattttgatttttgtgt 52  Q
    |||||||||||||||||||||||||||||||||    
T  5574330 tactttctttctctattattttgatttttgtgt 5574362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 15716985 - 15716862
Alignment:
Q  7 tacattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaa 106  Q
    |||||| |||||||||||||| ||||||||  |||||| ||||| ||| |  ||||||  |||| |||||| | |||||   | |||||||||||  |||    
T  15716985 tacattgttcttctactttctctctctattgctttgatatttgtatcactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaa 15716886  T
Q  107 gtattgttcaaataacattgctct 130  Q
       |||||||||||||||||||||    
T  15716885 aagttgttcaaataacattgctct 15716862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 37172131 - 37172244
Alignment:
Q  16 cttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttc 115  Q
    |||||| ||||| | || |||| |||||||||||||||| |  ||||||  |||| |||||||| |||||   | || |||| |||| |||  |||||||    
T  37172131 cttctattttctctttccattactttgatttttgtgtcattacctaaatttctttgtataatttggttgtccaacaaattgttacaagaaaaaattgttc 37172230  T
Q  116 aaataacattgctc 129  Q
    ||||||||||||||    
T  37172231 aaataacattgctc 37172244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 45405984 - 45405948
Alignment:
Q  16 cttctactttctttctctattattttgatttttgtgt 52  Q
    |||||||||||| |||||||| |||||||||||||||    
T  45405984 cttctactttctctctctattgttttgatttttgtgt 45405948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 8543 - 8656
Alignment:
Q  16 cttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttc 115  Q
    |||||||||||| | ||||||  ||||||||||||||||    ||||||  ||||||||||||||||||| | | |||||||||||| |||   ||||||    
T  8543 cttctactttctctttctattgctttgatttttgtgtcaccaactaaatttctttatataatttagttgtctaacaagttgtcacaagaaatagttgttc 8642  T
Q  116 aaataacattgctc 129  Q
    ||||||||||||||    
T  8643 aaataacattgctc 8656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 13556 - 13444
Alignment:
Q  17 ttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttca 116  Q
    ||||||||||| | ||||||| || ||||||||| ||| || ||||||  |||| ||||||||||||||   | |||||||||||| ||||  ||||| |    
T  13556 ttctactttctctttctattacttcgatttttgtatcactgcctaaatttctttgtataatttagttgtccaataagttgtcacaaaaaagagttgttta 13457  T
Q  117 aataacattgctc 129  Q
    |||||||||||||    
T  13456 aataacattgctc 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 59288 - 59400
Alignment:
Q  17 ttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaagtattgttca 116  Q
    ||||||||||| | ||||||| || ||||||||| ||| || ||||||  |||| ||||||||||||||   | |||||||||||| ||||  ||||| |    
T  59288 ttctactttctctttctattacttcgatttttgtatcactgcctaaatttctttgtataatttagttgtccaataagttgtcacaaaaaagagttgttta 59387  T
Q  117 aataacattgctc 129  Q
    |||||||||||||    
T  59388 aataacattgctc 59400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 8961 - 8840
Alignment:
Q  8 acattattcttctactttctttctctattattttgatttttgtgtcaatgtctaaatccctttatataatttagttgtatgagaagttgtcacaataaag 107  Q
    ||||| |||||||||||||| ||||||||  |||||||||||||||| |  ||||||  |||| |||||| | |||||   | |||||||||||  |||     
T  8961 acattgttcttctactttctctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaaaaagttgtcacatgaaaa 8862  T
Q  108 tattgttcaaataacattgctc 129  Q
      ||||||||||||||||||||    
T  8861 ggttgttcaaataacattgctc 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 28335 - 28295
Alignment:
Q  8 acattattcttctactttctttctctattattttgattttt 48  Q
    ||||| |||||||||||||| ||||||||| ||||||||||    
T  28335 acattgttcttctactttctctctctattactttgattttt 28295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 10960 - 10928
Alignment:
Q  20 tactttctttctctattattttgatttttgtgt 52  Q
    |||||||| ||||||||||||||||||||||||    
T  10960 tactttctctctctattattttgatttttgtgt 10928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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