View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_high_39 (Length: 314)
Name: NF15299_high_39
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_39 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0703 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 5820322 - 5820175
Alignment:
| Q |
15 |
agaaaaaactgacaagagtttggtgtgatgaaatagagattcaatattaatgcatgcttgcttacatgcaacatctaattttagcaacgaaatgctcctt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5820322 |
agaaaaaactgacaagagtttggtgtgatgaaatagagattcgacattaatgcatgcttgcttacatgcaacatctaattttagcaacgaaatgctcctt |
5820223 |
T |
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| Q |
115 |
ttctagaaaatgaatatttgtttgactttctagaatattaacaatatt |
162 |
Q |
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| T |
5820222 |
ttctagaaaatgaatatttgtttgactttctagaatattaacaatatt |
5820175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 164 - 314
Target Start/End: Original strand, 16862349 - 16862499
Alignment:
| Q |
164 |
acaccgtaaagtccgcttatcgcatttgcgctgatcttctacattcatccactcatgcgccatctaatcccccatggaagactctctggaacatgaaaat |
263 |
Q |
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| T |
16862349 |
acaccgtaaagtccgcttatcgcatttgcgctgatcttctacattcatccactcatgtgccatctaatcccccatggatgactctctggaacatgaaaat |
16862448 |
T |
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| Q |
264 |
tccaccccgtgtttgttcctttctttggcgccttgctcatcaatgccttcc |
314 |
Q |
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|||||| ||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
16862449 |
tccaccacgtgtttgttcctttctttggcgtcttgctcgtcaatgccttcc |
16862499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 164 - 314
Target Start/End: Complemental strand, 647 - 501
Alignment:
| Q |
164 |
acaccgtaaagtccgcttatcgcatttgcgctgatcttctacattcatccactcatgcgccatctaatcccccatggaagactctctggaacatgaaaat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
647 |
acaccgtaaagtccgcttatcgcatttgcgctgatcttctacattcatccactcatgcgccatctaatcccccat----gactctctggaacatgaaaat |
552 |
T |
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| Q |
264 |
tccaccccgtgtttgttcctttctttggcgccttgctcatcaatgccttcc |
314 |
Q |
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|||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
551 |
tccaccacgtgtttgttccttcctttggcgtcttgctcatcaatgccttcc |
501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 164 - 314
Target Start/End: Complemental strand, 12459755 - 12459609
Alignment:
| Q |
164 |
acaccgtaaagtccgcttatcgcatttgcgctgatcttctacattcatccactcatgcgccatctaatcccccatggaagactctctggaacatgaaaat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12459755 |
acaccgtaaagtccgcttatcgcatttgcgctgatcttctacattcatccactcatgcgccatctaatcccccat----gactctctggaacatgaaaat |
12459660 |
T |
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| Q |
264 |
tccaccccgtgtttgttcctttctttggcgccttgctcatcaatgccttcc |
314 |
Q |
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|||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
12459659 |
tccaccacgtgtttgttccttcctttggcgtcttgctcatcaatgccttcc |
12459609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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