View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15299_high_4 (Length: 659)
Name: NF15299_high_4
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 70 - 213
Target Start/End: Original strand, 17819345 - 17819486
Alignment:
| Q |
70 |
atgtattattctagtctgtagaaagaggtagtatcttggcaagttgttcttgaaaatgtcatcaaataactttgttttttat---gaagactatagatat |
166 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17819345 |
atgtattattctagtctttagaaagaggtagtatcttggcaagttgttcttgtaaatgtcatcaaataactttgttttttatgaagaagactatagatat |
17819444 |
T |
|
| Q |
167 |
caatgagagttgtcttgtcaacttttatattcattcatatatgttac |
213 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17819445 |
caaggagag-----ttgtcaacttttatattcattcatatatgttac |
17819486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 368 - 472
Target Start/End: Original strand, 17819772 - 17819878
Alignment:
| Q |
368 |
gcgtaaatgcagtagtgttcctagtttgaatgtaggagcaaatatttagtatataggt--tgtgtattctcgaatgacaggtgagtttgatgaaatcaca |
465 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||| ||| ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
17819772 |
gcgtaaatgcagtagtgtacctagtttgaatgtaggagcaaagattcagtacataggttatgtatattctcaaatgacgggtgagtttgatgaaatcaca |
17819871 |
T |
|
| Q |
466 |
gtaacac |
472 |
Q |
| |
|
||||||| |
|
|
| T |
17819872 |
gtaacac |
17819878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 17819260 - 17819331
Alignment:
| Q |
14 |
attatactaactaaaaatataaacaataatnnnnnnnntcatatgcttctttggatatgtattattctagtct |
86 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17819260 |
attatactaactaaaaatataaaaaataataaaaaaa-tcatatgcttctttggatatgtattattctagtct |
17819331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University