View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_high_42 (Length: 303)
Name: NF15299_high_42
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 11365097 - 11364811
Alignment:
| Q |
1 |
aaatgacaatgctaagatgtaaaatatgtttatgtgatgcaaagatatttagcagtttaaaaagaatgaccaatgtactgttgtttcaggtaacaaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11365097 |
aaatgacaatgctaagatgtaaaatatgtttatgtgatgcaaagatatgcagcagtttaaaaagaatgaccaatctactgttgtttcaggtaacaaaaac |
11364998 |
T |
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| Q |
101 |
tcaccaaaattaaatgttaatagagtacaagatataccttgtcaagcaaatcattttctacatcattcttaacaagatgtgacaagcatctgattaatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11364997 |
tcaccaaaattaaatgttaatagagtacaagatataccttgtcaagcaaatcattttctacatcattcttaacaagatgtgacaagcatctgattaatcc |
11364898 |
T |
|
| Q |
201 |
aggcagagaaacctttagattcgnnnnnnnatccttattgaagtacaagatcttcccnnnnnnntctttatagttctggaaaatctg |
287 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11364897 |
aggcagagaaacctttagattcgttttttgatccttattgaagtacaagatcttcccaaaaaaatctttatagttctggaaaatctg |
11364811 |
T |
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