View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_high_57 (Length: 238)

Name: NF15299_high_57
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_high_57
NF15299_high_57
[»] chr5 (3 HSPs)
chr5 (1-222)||(7237117-7237338)
chr5 (15-109)||(41715045-41715138)
chr5 (3-143)||(38755597-38755731)
[»] chr6 (5 HSPs)
chr6 (1-143)||(1415477-1415619)
chr6 (52-143)||(9627226-9627315)
chr6 (35-126)||(12155925-12156016)
chr6 (2-108)||(33908629-33908728)
chr6 (18-141)||(10383996-10384117)
[»] chr8 (2 HSPs)
chr8 (2-109)||(14958016-14958123)
chr8 (16-68)||(42501015-42501067)
[»] scaffold0035 (1 HSPs)
scaffold0035 (19-109)||(24413-24503)
[»] chr1 (3 HSPs)
chr1 (1-108)||(7440836-7440941)
chr1 (3-109)||(6397709-6397812)
chr1 (36-143)||(41941071-41941178)
[»] chr2 (1 HSPs)
chr2 (44-141)||(31395247-31395341)
[»] chr4 (3 HSPs)
chr4 (48-85)||(9838604-9838641)
chr4 (183-222)||(49590922-49590961)
chr4 (58-109)||(3284202-3284251)
[»] chr3 (5 HSPs)
chr3 (38-99)||(35223400-35223461)
chr3 (2-107)||(43361611-43361716)
chr3 (93-143)||(8540986-8541036)
chr3 (1-67)||(8543073-8543139)
chr3 (115-143)||(8543037-8543065)
[»] chr7 (1 HSPs)
chr7 (17-76)||(43814388-43814447)
[»] scaffold0027 (1 HSPs)
scaffold0027 (3-120)||(43667-43784)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7237117 - 7237338
Alignment:
Q  1 cgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |    
T  7237117 cgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctataattccatttttattactgtgataagaattagggtttcgg 7237216  T
Q  101 tgttacaagttgtgtatatagtactactacgattcagtttacatatagatgctaaaaatgttgttttaaatacatcaataac-taactaataatgttttt 199  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7237217 tgttacaagttgtgtatatagtactactacga-tcagtttacatatagatgctaaaaatgttgttttaaatacatcaataacttaactaataatgttttt 7237315  T
Q  200 gtgcaaatatcaattgttgattg 222  Q
    |||||||||||||||||||||||    
T  7237316 gtgcaaatatcaattgttgattg 7237338  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 41715138 - 41715045
Alignment:
Q  15 gcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaag 109  Q
    ||||||||| ||||| || |||||||| || | |||||||| |||||||||||||| |||||||||||| |||| ||||| ||||||||||||||    
T  41715138 gcagttcggacaattgtgcctacctctacgacgatagagcatctatagttccgtttctattactgtgatgagaa-taggggttcagtgttacaag 41715045  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 38755731 - 38755597
Alignment:
Q  3 atatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtg 102  Q
    ||||||||||   ||||| || ||||| || |||||||||||  ||||||  || |||||||||     |||||||||||||| || ||| |||| ||||    
T  38755731 atatttgttaatacagtttggtcaattgtgcctacctctgcgattatagaatagttatagttcc-----tattactgtgataa-aaatagagttttagtg 38755638  T
Q  103 ttacaagttgtgtatatagtactactacgattcagtttaca 143  Q
    ||||||  ||| ||||||| |||||||||| |||| |||||    
T  38755637 ttacaaactgtatatatagcactactacgactcaggttaca 38755597  T

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Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 1415619 - 1415477
Alignment:
Q  1 cgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcag 100  Q
    ||||| |||||| |||||||||||||||| || |||||||| ||  ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||     
T  1415619 cgatacttgttaacgcagttcggccaattgtggctacctctacgattatagagcagctatagttctgtttctattattgtgataagaattagggtttcaa 1415520  T
Q  101 tgttacaagttgtgtatatagtactactacgattcagtttaca 143  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  1415519 tgttacaagttgtatatatagtactactatgattcagtttaca 1415477  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 9627226 - 9627315
Alignment:
Q  52 agcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtatatagtactactacgattcagtttaca 143  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  9627226 agcagctatagttctgtttctatcactgtgataagaattagggtttcagtgttacaag--caatatatagtactactacgattcagtttaca 9627315  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 12155925 - 12156016
Alignment:
Q  35 tacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtatatagtacta 126  Q
    ||||| |||| |||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||    
T  12155925 tacctatgcgactatagggcaactatagttccgtttctattactgtgataagaattaggatttcagtgttacaaactgtatatatagtacta 12156016  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 33908629 - 33908728
Alignment:
Q  2 gatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagt 101  Q
    ||||||||||| ||||||||| |||||| || |||||       ||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  33908629 gatatttgttaacgcagttcgaccaattgtgcctacc-------ctatagagctgctatagttccgtttctattactgtgataggaattagggtttcagt 33908721  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 10383996 - 10384117
Alignment:
Q  18 gttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtat 117  Q
    |||||||||||  ||  ||||||||||  |||||| ||  ||||||| | ||| ||||||||||||||  |||||||||| ||| ||| ||||  | |||    
T  10383996 gttcggccaatgatgcttacctctgcgattatagaacaattatagtttcatttgtattactgtgataa--attagggttttagtattataagtaatatat 10384093  T
Q  118 atagtactactacgattcagttta 141  Q
    |||| |||||||||||||||||||    
T  10384094 atagaactactacgattcagttta 10384117  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 14958123 - 14958016
Alignment:
Q  2 gatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagt 101  Q
    ||||||||||| | |||||||||||||| || |||||||||||  ||||||||||||||||||  |||| ||||||||||| ||||||||||||||||||    
T  14958123 gatatttgttaacacagttcggccaattgtgcctacctctgcgattatagagcagctatagttatgtttctattactgtgagaagaattagggtttcagt 14958024  T
Q  102 gttacaag 109  Q
    ||||||||    
T  14958023 gttacaag 14958016  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 42501067 - 42501015
Alignment:
Q  16 cagttcggccaattttgtctacctctgcggctatagagcagctatagttccgt 68  Q
    |||||||||||||| ||||||||||| | || ||||||  |||||||||||||    
T  42501067 cagttcggccaattgtgtctacctctacagccatagagttgctatagttccgt 42501015  T

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Target: scaffold0035 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 24503 - 24413
Alignment:
Q  19 ttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaag 109  Q
    ||||||||||| || ||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||| |||| ||||| ||||||||||    
T  24503 ttcggccaattatgcctacctctgcgactatagagcagctgtagttccgtttctattacagtgataagacttagagtttcggtgttacaag 24413  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 7440941 - 7440836
Alignment:
Q  1 cgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcag 100  Q
    |||||||||||| |||||||||||||||| | | ||| |||||| ||||||||| | |||||||  |||||||||| ||||||  ||||||| ||||| |    
T  7440941 cgatatttgttaacgcagttcggccaattatatttacttctgcgactatagagcggttatagttttgtttttattattgtgat--gaattagagtttcgg 7440844  T
Q  101 tgttacaa 108  Q
    ||||||||    
T  7440843 tgttacaa 7440836  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 6397709 - 6397812
Alignment:
Q  3 atatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtg 102  Q
    |||||||||| |||| |||||||| || || ||||||||| | |||||||||||||||||||  |||| ||||||||||||  ||| || ||||||||||    
T  6397709 atatttgttaacgcacttcggcca-ttgtgcctacctctgtgactatagagcagctatagttttgtttctattactgtgat--gaactaaggtttcagtg 6397805  T
Q  103 ttacaag 109  Q
    |||||||    
T  6397806 ttacaag 6397812  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 41941178 - 41941071
Alignment:
Q  36 acctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtata---tagtactactacga 132  Q
    ||||||||| | |||||| |||||||||||  ||| | ||| ||||||  |||||||||||||| ||||||||||  | ||||   || |||||||||||    
T  41941178 acctctgcgacaatagagtagctatagttctatttatgtta-tgtgat--gaattagggtttcaatgttacaagtaatatatatactactactactacga 41941082  T
Q  133 ttcagtttaca 143  Q
    |||||||||||    
T  41941081 ttcagtttaca 41941071  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 31395247 - 31395341
Alignment:
Q  44 ggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtgttacaagttgtgtatatagtactactacgattcagttta 141  Q
    ||||||| |||||||||| |||||||| |||||||| ||| |   |||||||||||||||||||||   | |||||||||||||||||||||| ||||    
T  31395247 ggctataaagcagctataattccgtttatattactgcgatga---ttagggtttcagtgttacaagcaatatatatagtactactacgattcaattta 31395341  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 9838641 - 9838604
Alignment:
Q  48 atagagcagctatagttccgtttttattactgtgataa 85  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9838641 atagagcagctatagttccgtttttattactgtgataa 9838604  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 49590961 - 49590922
Alignment:
Q  183 taactaataatgtttttgtgcaaatatcaattgttgattg 222  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  49590961 taactaataatgttttagtgcaaatatcaattgttgattg 49590922  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 3284202 - 3284251
Alignment:
Q  58 tatagttccgtttttattactgtgataagaattagggtttcagtgttacaag 109  Q
    ||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  3284202 tatagttccgtttttattactgtgat--gaattagggttttagcgttacaag 3284251  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 35223400 - 35223461
Alignment:
Q  38 ctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttca 99  Q
    ||||||| ||||||||||||||||||||||||| |||| ||| ||| | |||||||||||||    
T  35223400 ctctgcgactatagagcagctatagttccgtttatatttctgcgatgaaaattagggtttca 35223461  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 43361716 - 43361611
Alignment:
Q  2 gatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagt 101  Q
    ||||||||||| || |||| |||||||  | |||||||||||  ||||| ||||| | ||||| ||||| ||||| |||||| ||||||| |||||||||    
T  43361716 gatatttgttaacgtagtttggccaatgatatctacctctgcaactatacagcagttttagtttcgtttgtattaatgtgatgagaattaaggtttcagt 43361617  T
Q  102 gttaca 107  Q
     |||||    
T  43361616 attaca 43361611  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 8541036 - 8540986
Alignment:
Q  93 ggtttcagtgttacaagttgtgtatatagtactactacgattcagtttaca 143  Q
    |||||| || ||||||| ||| |||||||||||||||||||||||||||||    
T  8541036 ggtttctgttttacaagctgtatatatagtactactacgattcagtttaca 8540986  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 8543139 - 8543073
Alignment:
Q  1 cgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccg 67  Q
    |||||||||||| |||||||||||||||| || ||||||| | | ||||||| || |||||||||||    
T  8543139 cgatatttgttaacgcagttcggccaattgtgcctacctcggtgactatagaacaactatagttccg 8543073  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 8543065 - 8543037
Alignment:
Q  115 tatatagtactactacgattcagtttaca 143  Q
    |||||||||||||||||||||||||||||    
T  8543065 tatatagtactactacgattcagtttaca 8543037  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 43814388 - 43814447
Alignment:
Q  17 agttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttatta 76  Q
    |||||||||| || || ||||||||||| |||||||| || ||||||||||||| |||||    
T  43814388 agttcggccagttgtgcctacctctgcgactatagagaagttatagttccgtttgtatta 43814447  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 43667 - 43784
Alignment:
Q  3 atatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctatagttccgtttttattactgtgataagaattagggtttcagtg 102  Q
    ||||||||||  ||| ||||||||||| ||| || || || | |||| || || | ||||||| | || ||||||| |||||| |||||  |||||| ||    
T  43667 atatttgttaatgcaattcggccaattatgtttatctatgtgactattgaacaacaatagttctgattctattactatgataaaaattaaagtttcaatg 43766  T
Q  103 ttacaagttgtgtatata 120  Q
    ||||||||||| ||||||    
T  43767 ttacaagttgtatatata 43784  T

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