View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_high_59 (Length: 238)
Name: NF15299_high_59
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41936724 - 41936945
Alignment:
| Q |
1 |
cgcaagatgataaaagataagataattttaagagttaatgaaaaaatgtgtgaagtgtggacaaaaattaagtagttattactatttgatgattgatcct |
100 |
Q |
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| T |
41936724 |
cgcaagatgataaaagataagataattttaagagttaatgaaaaaatgtgtgaagtgtggacaaaaattaagtagttattactatttgatgattgatcct |
41936823 |
T |
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| Q |
101 |
ttcaagattttgttttggctaatttttccgtaaataattacgagacattcaaattcactactatttactttgtttatgctcgtgtaaataaatagttagt |
200 |
Q |
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| T |
41936824 |
ttcaagattttgttttggctaatttttccgtaaataattacgagacattcaaattcactactatttactttggttatggtcgtgtaaataaatagttagt |
41936923 |
T |
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| Q |
201 |
cttagaataatagctttaacat |
222 |
Q |
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||||||| |||||||||||||| |
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| T |
41936924 |
cttagaacaatagctttaacat |
41936945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 9264711 - 9264787
Alignment:
| Q |
4 |
aagatgataaaagataagataattttaagagttaatgaaaaaatgtgtgaagtgtggacaaaaattaagtagttatt |
80 |
Q |
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|||| |||||| |||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||| |
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| T |
9264711 |
aagaggataaacgataagataattttaagagttattgaaaatatgtatgaagtgtggaaaaaaattaagtagttatt |
9264787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 9265066 - 9265116
Alignment:
| Q |
77 |
tattactatttgatgattgatcctttcaagattttgttttggctaattttt |
127 |
Q |
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| T |
9265066 |
tattactatttgatgattgattctttcaagattttgttttgactaattttt |
9265116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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