View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_high_66 (Length: 225)

Name: NF15299_high_66
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_high_66
NF15299_high_66
[»] chr5 (8 HSPs)
chr5 (13-208)||(37316102-37316297)
chr5 (72-208)||(37239816-37239952)
chr5 (148-207)||(37198888-37198947)
chr5 (148-194)||(37384869-37384915)
chr5 (148-194)||(37218297-37218343)
chr5 (148-194)||(37224013-37224059)
chr5 (20-49)||(5360238-5360267)
chr5 (21-49)||(17153537-17153565)
[»] chr2 (1 HSPs)
chr2 (149-206)||(8732683-8732740)
[»] chr3 (2 HSPs)
chr3 (151-206)||(36200783-36200838)
chr3 (19-49)||(48191713-48191743)
[»] chr8 (1 HSPs)
chr8 (19-49)||(24471289-24471319)
[»] chr6 (1 HSPs)
chr6 (20-49)||(6894812-6894841)
[»] chr4 (1 HSPs)
chr4 (21-49)||(39160928-39160956)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 37316297 - 37316102
Alignment:
Q  13 caaaggtaatttttgtttataatagtgaccggaggataaattgttcagttagacaaaggggtatctaaacctaccaagactacaagaccccttgattcag 112  Q
    ||||||||| |||||||||||| ||||| ||||||    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37316297 caaaggtaacttttgtttataacagtgatcggagggcgtattgttcagttagacaaaggggtatctaaacctaccaaggctacaagaccccttgattcag 37316198  T
Q  113 caacgaattcacctgtcttgagaacagcattctttgcagaaataagttcaaaaagaacaactccaaaagcatatacatctatttttggagaaacat 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37316197 caacgaattcacctgtcttcagaacagcattctttgcagaaataagttcaaaaagaacaactccaaaagcataaacatctatttttggagaaacat 37316102  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 72 - 208
Target Start/End: Complemental strand, 37239952 - 37239816
Alignment:
Q  72 ggtatctaaacctaccaagactacaagaccccttgattcagcaacgaattcacctgtcttgagaacagcattctttgcagaaataagttcaaaaagaaca 171  Q
    |||||||| |||||||||   |||||||||| ||||||| |||||  ||||||||||||| || |||||||||||||||| |||||||||| ||||||||    
T  37239952 ggtatctagacctaccaattgtacaagaccctttgattctgcaacagattcacctgtcttcaggacagcattctttgcagtaataagttcataaagaaca 37239853  T
Q  172 actccaaaagcatatacatctatttttggagaaacat 208  Q
    || ||||||||||||||||||||||||||||||||||    
T  37239852 acgccaaaagcatatacatctatttttggagaaacat 37239816  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 37198947 - 37198888
Alignment:
Q  148 gcagaaataagttcaaaaagaacaactccaaaagcatatacatctatttttggagaaaca 207  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||||    
T  37198947 gcagaaattagttcataaagaactactccaaaagcatatacatctatttttgaagaaaca 37198888  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 37384869 - 37384915
Alignment:
Q  148 gcagaaataagttcaaaaagaacaactccaaaagcatatacatctat 194  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  37384869 gcagaaattagttcataaagaacaactccaaaagcatatacatctat 37384915  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 37218343 - 37218297
Alignment:
Q  148 gcagaaataagttcaaaaagaacaactccaaaagcatatacatctat 194  Q
    |||||||| |||||| ||||||||||||||||||| || ||||||||    
T  37218343 gcagaaattagttcataaagaacaactccaaaagcgtacacatctat 37218297  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 37224059 - 37224013
Alignment:
Q  148 gcagaaataagttcaaaaagaacaactccaaaagcatatacatctat 194  Q
    |||||||| |||||| ||||||||||||||||||| || ||||||||    
T  37224059 gcagaaattagttcataaagaacaactccaaaagcgtacacatctat 37224013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 5360238 - 5360267
Alignment:
Q  20 aatttttgtttataatagtgaccggaggat 49  Q
    ||||||||||||||||||||||||||||||    
T  5360238 aatttttgtttataatagtgaccggaggat 5360267  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 17153537 - 17153565
Alignment:
Q  21 atttttgtttataatagtgaccggaggat 49  Q
    |||||||||||||||||||||||||||||    
T  17153537 atttttgtttataatagtgaccggaggat 17153565  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 8732683 - 8732740
Alignment:
Q  149 cagaaataagttcaaaaagaacaactccaaaagcatatacatctatttttggagaaac 206  Q
    |||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  8732683 cagatataagctcaaacagaacaactccaaatgcatatacatctattttgggagaaac 8732740  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 36200838 - 36200783
Alignment:
Q  151 gaaataagttcaaaaagaacaactccaaaagcatatacatctatttttggagaaac 206  Q
    |||||||||||| |||||||||||||||| ||||| ||||||| ||| ||||||||    
T  36200838 gaaataagttcataaagaacaactccaaaggcataaacatctactttgggagaaac 36200783  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 48191743 - 48191713
Alignment:
Q  19 taatttttgtttataatagtgaccggaggat 49  Q
    |||||||||||||||||||||||||||||||    
T  48191743 taatttttgtttataatagtgaccggaggat 48191713  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 24471289 - 24471319
Alignment:
Q  19 taatttttgtttataatagtgaccggaggat 49  Q
    |||||||||||||||||||||||||||||||    
T  24471289 taatttttgtttataatagtgaccggaggat 24471319  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 6894841 - 6894812
Alignment:
Q  20 aatttttgtttataatagtgaccggaggat 49  Q
    ||||||||||||||||||||||||||||||    
T  6894841 aatttttgtttataatagtgaccggaggat 6894812  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 39160928 - 39160956
Alignment:
Q  21 atttttgtttataatagtgaccggaggat 49  Q
    |||||||||||||||||||||||||||||    
T  39160928 atttttgtttataatagtgaccggaggat 39160956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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