View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_high_8 (Length: 543)
Name: NF15299_high_8
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 12531419 - 12531943
Alignment:
| Q |
1 |
aggaagtgtgctgagatggctggaatggctgtacagattgttgtgtcagctgttttgggagatccaacggttcttattgctgggattatggggtcgttga |
100 |
Q |
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| T |
12531419 |
aggaagtgtgctgagatggctggaatggctgtacagatcgttgtctcagctgttttgggagatccaacggttcttattgctgggattatggggtcgttga |
12531518 |
T |
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| Q |
101 |
tatcgcgatcttgatcttgtggtggatggtagttcattgtattgtatcaaatatctgctactgtgaaaaatgtaagtggaatatttgtgtatcaatttca |
200 |
Q |
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| T |
12531519 |
tatcgcgatcttgatcttgtggtggatggtagttcattgtattgtatcaaatatctgctattgtgaaaaatgtcagtggaatatttgtgtatcaatttca |
12531618 |
T |
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| Q |
201 |
atgaatatatattcatatggaagttcttatcttggatttcttttgatattgtttaggggttttgtgtttagaaattttttgctttgatcatgactatgag |
300 |
Q |
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| T |
12531619 |
atgaatatatattcatatggaaattcttatcttggatttcttttgatattgtttaggggttttatgtttagaaattttttgctttgatcatgactatgag |
12531718 |
T |
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| Q |
301 |
cttaactcaagtcttgacaaactaattaacctgtaaaatatatcttccttttgataaaacctgtaaaaaattatcgaacataagatgtgacacattacta |
400 |
Q |
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| T |
12531719 |
cttaattcaaatcttgacaaactaattaacctgtaaaatatatcttccttttgacaaaacctgtaaaaaattatcgaacataagatgtgacacattacta |
12531818 |
T |
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| Q |
401 |
agatattgatggtgtgcatataccgttgtaagttgtttcttgaacacctatttttgtacatatgcatttttgttgttgagtgttatgtcgatatttgttt |
500 |
Q |
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| T |
12531819 |
agatattgacggtgtgcatatacccttgtaagttgtttcttgaacacctatttttgtacatatgcatttttgttgttgagtgttatgtcgatatttgttt |
12531918 |
T |
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| Q |
501 |
tcaagtagctgtctgacgaacatat |
525 |
Q |
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| T |
12531919 |
tcaagtagctgtctgatgaacatat |
12531943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 52 - 335
Target Start/End: Original strand, 12533537 - 12533824
Alignment:
| Q |
52 |
gttttgggagatccaacggttcttattgctgggattatggggtcgttgatatcgcgatcttgatcttgtggtggatggtagttcattgtattgtatcaaa |
151 |
Q |
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| T |
12533537 |
gttttgggagagccaacggttcttattgctgggattatggggtcattgatgtcacgagcttgatcttgtggtcgatggtagttcattgtattgtatcaga |
12533636 |
T |
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| Q |
152 |
tatctgctactgtgaaaaatgtaagtggaatatttgtgtatcaatttcaatgaatatata---ttcatatggaagttcttatcttggatttcttttgat- |
247 |
Q |
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| T |
12533637 |
tgtatgctattgtgataaatgtaagtgaaatatttgtgtattaatttgaatgtatattcagatttcagatggaagttgttatcttggaatt-ggttgatg |
12533735 |
T |
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| Q |
248 |
-attgtttaggggttttgtgtttagaaattttttgctttgatcatgactatgagcttaactcaagtcttgacaaactaattaacctgta |
335 |
Q |
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|||||||||||| ||||| | || ||| |||| || |||| |||||||||||| ||| | ||||||| ||||| | ||||| |||| |
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| T |
12533736 |
gattgtttaggggctttgtctataaaaaactttttctatgattatgactatgagcataattggagtcttgccaaacaagttaacatgta |
12533824 |
T |
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