View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_low_1 (Length: 945)

Name: NF15299_low_1
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_low_1
NF15299_low_1
[»] chr7 (5 HSPs)
chr7 (247-929)||(697374-698052)
chr7 (22-166)||(698478-698619)
chr7 (711-798)||(699597-699684)
chr7 (490-566)||(25066569-25066646)
chr7 (159-191)||(698110-698142)
[»] chr8 (2 HSPs)
chr8 (490-566)||(44953023-44953099)
chr8 (512-569)||(7970063-7970120)
[»] chr5 (1 HSPs)
chr5 (423-463)||(9358508-9358548)
[»] chr4 (1 HSPs)
chr4 (484-566)||(7817773-7817856)
[»] chr3 (3 HSPs)
chr3 (484-565)||(23482671-23482753)
chr3 (499-566)||(50508404-50508472)
chr3 (490-563)||(7681023-7681097)
[»] scaffold0896 (1 HSPs)
scaffold0896 (490-566)||(3757-3834)
[»] chr6 (2 HSPs)
chr6 (490-566)||(7080972-7081049)
chr6 (490-566)||(8811310-8811387)


Alignment Details
Target: chr7 (Bit Score: 608; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 247 - 929
Target Start/End: Complemental strand, 698052 - 697374
Alignment:
Q  247 caccgtagaaggttgcagagagggggg-actaggattctaagtagaagtgagaagaagtttatatattattgtaataacaaggaaccgtgctgaccaagg 345  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  698052 caccgtagaaggttgcagagagggggggactaggattctaagtagaagtgagaagaagtttatatattattgtaataacaaggaaccgtgctgaccaagg 697953  T
Q  346 aacgtggggtgcaaggaattaaacagtcaaattacttatatttacttactggtttttgtgactgtgttattattttgactgcagccattggatcaaagca 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||     | | |||||||||||||||||||||||||||||||||||||||||||||    
T  697952 aacgtggggtgcaaggaattaaacagtcaaattacttatatttact-----ggtgttgtgactgtgttattattttgactgcagccattggatcaaagca 697858  T
Q  446 atgcttcagattcactttactccaagatgaagaaactgaagattaaattaaattttatttaaggatattttttcgttttatggtgtaaccagaaatacat 545  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697857 atgcttcagattcactttactccaagatgaagaaactgaagattaaattaaattttatttaaggatattttttcgttttatggtgtaaccagaaatacat 697758  T
Q  546 agggtgtaattagaaaaattcgaaaatactctcaaataagaacgtcatttctatattttcagacataattttctctttcacttcatcaatccaacaatac 645  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697757 agggtgtaattagaaaaattcaaaaatactctcaaataagaacgtcatttctatattttcagacataattttctctttcacttcatcaatccaacaatac 697658  T
Q  646 acatgtctcgaaatctcttcatttgatatataccaacactctctctcactaataagcctgccaatttgattttgcagcagccttacactttttcccttct 745  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  697657 acatgtctcgaaatctcttcatttgatatataccaacactctctctcactaataagcctgccaattcgattttgcggcagccttacactttttcccttct 697558  T
Q  746 tatttattattaagcgaatggtttgcgttggaatcatcgtcgacagcaccctcagtgccaacaacattttcttcttgtgcgtaggggaacacaagagggt 845  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  697557 tatttattattaagctaatggtttgcgttggaatcatcgacgacagcaccctcagtgccaacaacattttcttcttgtgcgcaggggaacacaggagggt 697458  T
Q  846 tgttgaactgttgaatttctctaacgagtttatcgacagaggctttgatagacatatcgtgtaaggaaaggcagacaatggaag 929  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  697457 tgtcgaactgttgaatttctctaacgagtttatcgacagaggctttgatagacatatcgtgcaatgaaaggcagacaatggaag 697374  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 698619 - 698478
Alignment:
Q  22 atcaattctacaaacaaaagcagttctacttgaacacatctaaacacgttaaaatcannnnnnnnataagttttcctccactagaa--------atttga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||            |||||||||||||||||        ||| ||    
T  698619 atcaattctacaaacaaaagcagttctacttgaacacatctaaacaagttaaaatcat-----------gttttcctccactagaacttatcctattcga 698531  T
Q  114 gttactgttagatgcgccgcaataggagctatatgaaaaccctggacatggaa 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  698530 gttactgttagatgcgccgcaataggagctatatgaaaaccctggacatggaa 698478  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 711 - 798
Target Start/End: Complemental strand, 699684 - 699597
Alignment:
Q  711 ttgattttgcagcagccttacactttttcccttcttatttattattaagcgaatggtttgcgttggaatcatcgtcgacagcaccctc 798  Q
    |||||||||||||||||||| |||| |||||||  || || ||||||| |||| | || || |||||||||||||||  |||||||||    
T  699684 ttgattttgcagcagccttagacttcttccctttgtacttgttattaaccgaaggtttggcattggaatcatcgtcggaagcaccctc 699597  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 566
Target Start/End: Original strand, 25066569 - 25066646
Alignment:
Q  490 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 566  Q
    ||||||||||||| | ||||||| |||| || ||||| |||||||| |||| || ||||||||||| |||||||||||    
T  25066569 aaattaaattttactaaaggataattttgtcattttagggtgtaacaagaattaaatagggtgtaactagaaaaattc 25066646  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 698142 - 698110
Alignment:
Q  159 acatggaaattgaagatgaagttggtagggtga 191  Q
    |||||||||||||||||||||||||||||||||    
T  698142 acatggaaattgaagatgaagttggtagggtga 698110  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 490 - 566
Target Start/End: Complemental strand, 44953099 - 44953023
Alignment:
Q  490 aaattaaattttatttaaggatattttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 566  Q
    ||||||||||| |||||| |||| ||| || ||||| ||||||||||  |||||||||||||| |||||||||||||    
T  44953099 aaattaaatttcatttaaagataatttatcattttaaggtgtaaccatgaatacatagggtgtgattagaaaaattc 44953023  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 569
Target Start/End: Original strand, 7970063 - 7970120
Alignment:
Q  512 attttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattcgaa 569  Q
    ||||| || ||||| ||||||| |||||||| | |||||||||||||||||| |||||    
T  7970063 attttgtcattttagggtgtaatcagaaatataaagggtgtaattagaaaaagtcgaa 7970120  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 423 - 463
Target Start/End: Original strand, 9358508 - 9358548
Alignment:
Q  423 actgcagccattggatcaaagcaatgcttcagattcacttt 463  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9358508 actgcagccattggatcaaagcaatgcttcagattcacttt 9358548  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 484 - 566
Target Start/End: Complemental strand, 7817856 - 7817773
Alignment:
Q  484 aagattaaattaaattttatttaaggat-attttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 566  Q
    |||||||||||||||||||||||||||| ||||| || |||||  ||||||  || ||||| ||  ||||||||||||||||||    
T  7817856 aagattaaattaaattttatttaaggataattttgtcattttagagtgtaattaggaatacgtattgtgtaattagaaaaattc 7817773  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 565
Target Start/End: Complemental strand, 23482753 - 23482671
Alignment:
Q  484 aagattaaattaaattttatttaaggat-attttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaatt 565  Q
    |||||||||||||||||||||||||||| ||||| || |||||  |||||||||  |||||||    ||||||||||||||||    
T  23482753 aagattaaattaaattttatttaaggataattttatcattttagtgtgtaaccatgaatacatgaaatgtaattagaaaaatt 23482671  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 499 - 566
Target Start/End: Original strand, 50508404 - 50508472
Alignment:
Q  499 tttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 566  Q
    |||||||||||||| |||| || ||||| ||||||||||| |||  || ||||||||||||||||||||    
T  50508404 tttatttaaggataattttatcattttagggtgtaaccaggaatgtatggggtgtaattagaaaaattc 50508472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 490 - 563
Target Start/End: Original strand, 7681023 - 7681097
Alignment:
Q  490 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaa 563  Q
    ||||||||||||||  |||| || |||| || ||||| |||| |||||||| || ||||||||||||||||||||    
T  7681023 aaattaaattttatggaagggtaattttgtcattttagggtgcaaccagaattaaatagggtgtaattagaaaaa 7681097  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 566
Target Start/End: Original strand, 3757 - 3834
Alignment:
Q  490 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 566  Q
    |||| ||||||||| |||||||| |||| || ||||  ||||||||||| |||| |  ||||||||||||||||||||    
T  3757 aaatcaaattttatgtaaggataattttatcattttggggtgtaaccaggaatatacggggtgtaattagaaaaattc 3834  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 566
Target Start/End: Complemental strand, 7081049 - 7080972
Alignment:
Q  490 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 566  Q
    |||| ||||||||| |||||||| |||| || ||||  ||||||||||| |||| | || ||||||||||||||||||    
T  7081049 aaatcaaattttatctaaggataattttatcattttggggtgtaaccaggaatatacagtgtgtaattagaaaaattc 7080972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 566
Target Start/End: Original strand, 8811310 - 8811387
Alignment:
Q  490 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 566  Q
    |||| ||||||||| |||||||| |||| || ||||  ||||||||||| |||| |  ||||||||||||||||||||    
T  8811310 aaatcaaattttatgtaaggataattttatcattttggggtgtaaccaggaatatacggggtgtaattagaaaaattc 8811387  T

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