View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_low_10 (Length: 523)

Name: NF15299_low_10
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_low_10
NF15299_low_10
[»] chr2 (3 HSPs)
chr2 (1-384)||(9805184-9805568)
chr2 (413-505)||(9805086-9805180)
chr2 (183-291)||(7688837-7688945)
[»] chr1 (2 HSPs)
chr1 (161-291)||(6191191-6191321)
chr1 (183-291)||(21873599-21873707)
[»] scaffold0002 (1 HSPs)
scaffold0002 (183-291)||(484264-484372)
[»] chr7 (1 HSPs)
chr7 (183-291)||(16434588-16434696)
[»] chr5 (2 HSPs)
chr5 (183-291)||(33260576-33260684)
chr5 (344-397)||(31560534-31560587)
[»] scaffold0057 (1 HSPs)
scaffold0057 (183-291)||(78805-78913)
[»] chr4 (2 HSPs)
chr4 (211-320)||(25034031-25034139)
chr4 (211-294)||(25028621-25028704)
[»] chr8 (1 HSPs)
chr8 (344-392)||(19178569-19178617)
[»] chr6 (1 HSPs)
chr6 (249-291)||(2947903-2947945)
[»] chr3 (1 HSPs)
chr3 (202-291)||(9009491-9009580)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 9805568 - 9805184
Alignment:
Q  1 aggaaaacaaggtgatatatatgtggcttactttttagatttttccattgatttgagaaatataaaagttaatagttatgcctcataaaactataattta 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9805568 aggaaaacaaggtgat-tatatgtggcttactttttagatttttccattgatttgagaaatataaaagttaatagttatgcctcataaaactataattta 9805470  T
Q  101 ttatttgtcaatnnnnnnnnnn--ctataatttataactcttgcaccgactatataagaataccgttcatttgtaggcacagatgcaacctaatgggatt 198  Q
    ||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9805469 ttatttgtcaataaaaaaaaaaaactataatttataactcttgcaccgactatataagaataccgttcatttgtaggcacagatgcaacctaatgggatt 9805370  T
Q  199 gactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattttatgataacttatatt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9805369 gactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcagttttatgataacttatatt 9805270  T
Q  299 tgtataccatatgtattttcaacgacataaaagtaggtattaaattattgtacaaattgtaagtattcaattatccaacaacatta 384  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  9805269 tgtataccatatgtattttcaacgacataaaagtaggtattcaattattatacaaattgtaagtattcaattatccaacaacatta 9805184  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 413 - 505
Target Start/End: Complemental strand, 9805180 - 9805086
Alignment:
Q  413 aacttaggatttatcttgtatgctttattgttacgatgttaagtgatc--tatttgtttctttccttgtttatgtgataatttctatgagatttg 505  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||||  |||||||||||| |||||||||| |||||||||||||||| ||||    
T  9805180 aacttaggattcatcttgtatgctttattgtttcaatgttaagtgatctatatttgtttcttcccttgtttatctgataatttctatgaggtttg 9805086  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 7688945 - 7688837
Alignment:
Q  183 gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt 282  Q
    |||||||||||| | ||| |||| | | |||||||||||||||||||| ||  |  ||| ||||| ||||||||| ||||||||||||| |||| |||||    
T  7688945 gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtcttggatggaggtattttaattt 7688846  T
Q  283 tatgataac 291  Q
    |||||||||    
T  7688845 tatgataac 7688837  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 291
Target Start/End: Original strand, 6191191 - 6191321
Alignment:
Q  161 ccgttcatttgtaggcacagatgcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatc 260  Q
    |||||||||||||| ||   | |||||||||||| | ||| |||| | | |||||||||||||||||||| ||  |  ||| ||||| ||||||||| ||    
T  6191191 ccgttcatttgtagccaagaaagcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtc 6191290  T
Q  261 ttggatggaggaatttcaattttatgataac 291  Q
    ||||||||||| |||| ||||||||||||||    
T  6191291 ttggatggaggtattttaattttatgataac 6191321  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 21873707 - 21873599
Alignment:
Q  183 gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt 282  Q
    |||||||||||| | ||| |||| | | |||||||||||||||||||| ||  |  ||| ||||| ||||||||| ||||||||||||| |||| |||||    
T  21873707 gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtcttggatggaggtattttaattt 21873608  T
Q  283 tatgataac 291  Q
    |||||||||    
T  21873607 tatgataac 21873599  T

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Target: scaffold0002 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 484372 - 484264
Alignment:
Q  183 gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt 282  Q
    |||||||||||| | ||| |||| | | |||||||||||||||||||| ||  |  ||| ||||| ||||||||| ||||||||||||| |||| |||||    
T  484372 gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtcttggatggaggtattttaattt 484273  T
Q  283 tatgataac 291  Q
    |||||||||    
T  484272 tatgataac 484264  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 291
Target Start/End: Original strand, 16434588 - 16434696
Alignment:
Q  183 gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt 282  Q
    |||||||||||| | ||| |||| | | |||||||||||||||||||| ||  |  ||| ||||| ||||||||| ||||||||||||| |||| |||||    
T  16434588 gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtcttggatggaggtattttaattt 16434687  T
Q  283 tatgataac 291  Q
    |||||||||    
T  16434688 tatgataac 16434696  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 33260684 - 33260576
Alignment:
Q  183 gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt 282  Q
    |||||||||||| | ||| |||| | | |||||||||||||||||||| ||  |  ||| ||||| ||||||||| ||||||||||||| |||| |||||    
T  33260684 gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtcttggatggaggtattttaattt 33260585  T
Q  283 tatgataac 291  Q
    |||||||||    
T  33260584 tatgataac 33260576  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 31560534 - 31560587
Alignment:
Q  344 tattgtacaaattgtaagtattcaattatccaacaacattaacagaagaagagt 397  Q
    |||||||||||||||| ||||||||| || ||| ||||||||||||||| ||||    
T  31560534 tattgtacaaattgtaggtattcaatgatacaataacattaacagaagatgagt 31560587  T

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Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 78913 - 78805
Alignment:
Q  183 gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt 282  Q
    |||||||||||| | ||| |||| | | |||||||||||||||||| | ||  |  ||| ||||| ||||||||| ||||||||||||| |||| |||||    
T  78913 gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgttagatatcatctctgctaatattactaagtcttggatggaggtattttaattt 78814  T
Q  283 tatgataac 291  Q
    |||||||||    
T  78813 tatgataac 78805  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 25034031 - 25034139
Alignment:
Q  211 tatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattttatgataacttatatttgtataccatat 310  Q
    |||||||||||||||||  | ||  || ||| |||||  |||||||| ||||||||||||| |||| ||||||||||||||||| || | ||||| ||||    
T  25034031 tatgtgatgaagaatatagtagatattatctctgctaacattactaagtcttggatggaggtattttaattttatgataactta-atgtttatactatat 25034129  T
Q  311 gtattttcaa 320  Q
    ||||| ||||    
T  25034130 gtattgtcaa 25034139  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 25028704 - 25028621
Alignment:
Q  211 tatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattttatgataactta 294  Q
    ||||||||||||||||| || ||  || ||| |||||  ||  |||| ||||||||||||| |||| |||||||||||||||||    
T  25028704 tatgtgatgaagaatatactagatattatctctgctaacatcgctaagtcttggatggaggtattttaattttatgataactta 25028621  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 19178617 - 19178569
Alignment:
Q  344 tattgtacaaattgtaagtattcaattatccaacaacattaacagaaga 392  Q
    ||||||||||| |||| ||||||||| || |||||||||||||||||||    
T  19178617 tattgtacaaactgtaggtattcaatgatacaacaacattaacagaaga 19178569  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 2947945 - 2947903
Alignment:
Q  249 tattactaaatcttggatggaggaatttcaattttatgataac 291  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||    
T  2947945 tattactaagtcttggatggaggtattttaattttatgataac 2947903  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 9009580 - 9009491
Alignment:
Q  202 tgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattttatgataac 291  Q
    |||||| | |||||||||||||| ||||| ||  |  ||| ||||| ||||||||| |||| |||||||| |||| |||||||| |||||    
T  9009580 tgtgaatactatgtgatgaagaaaatgctagatatcatctctgctaatattactaagtcttagatggaggtattttaattttataataac 9009491  T

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