View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_11 (Length: 515)
Name: NF15299_low_11
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 116 - 411
Target Start/End: Original strand, 52705094 - 52705389
Alignment:
| Q |
116 |
cagtaattgactaaaaagcatatgttaaaattgctaatggaaaatactacgggataaacgtcgaatannnnnnngtacaagagactaaaagaataccaaa |
215 |
Q |
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| T |
52705094 |
cagtaattgactaaaaagcatatgttaaaactgctaatggaaaatactaagggataaacgtcgaatatttttttgtacaagagactaaaagaataccaaa |
52705193 |
T |
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| Q |
216 |
taatcttaaaataattcatttggtagaaacaatgaattaaaatgaaattcacatgtt-aaaacttattgttaaatagcttaaggattaaaaattcataag |
314 |
Q |
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| T |
52705194 |
taatcttaaaataattcatttggtagaaacaatgaattaaaatgaaattcacatgttaaaaacttattgttaaatagcttaaggattaaaaattcataag |
52705293 |
T |
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| Q |
315 |
tgaataagtgggataaccgcggttcgaactccaattnnnnnnnnnnnnnnncgatacttttaccaagcgagttaacttgcatgaattcgtagagtaa |
411 |
Q |
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| T |
52705294 |
tgaataagtgggataaccgccgttcgaactccaatttatgtatatattatacgatacttttaccaagc-agttaacttgcatgaattcgtagagtaa |
52705389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 409 - 500
Target Start/End: Original strand, 52706476 - 52706567
Alignment:
| Q |
409 |
taaaattctaaccaatagtgattcgacaaaacaaagcatattatcaagtctaaagtagaaatgannnnnnnctgccttttttccattagaag |
500 |
Q |
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| T |
52706476 |
taaaattctaaccaacagtgattcgacaaaacaaagcatattatcaagtctaaagtagaaatgatttttttctgccttttttccattagaag |
52706567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 52704993 - 52705036
Alignment:
| Q |
8 |
attatactcaaacaacattttttaatatctgtgatacttgttac |
51 |
Q |
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| T |
52704993 |
attatactcaaacaacattttttaatatctgtgatacttgttac |
52705036 |
T |
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