View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15299_low_12 (Length: 507)
Name: NF15299_low_12
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 8683420 - 8683905
Alignment:
| Q |
16 |
catgttataaatggaaaatgtttcactctttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683420 |
catgttataaatggaaaatgtttcactctttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatga |
8683519 |
T |
|
| Q |
116 |
gagggattcaaggtgctttgatcataagttcaagtttccaaatggctattggannnnnnnnnnnnnggagaaatgctgtcaggttagtatctgtaacgtc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
8683520 |
gagggattcaaggtgctttgatcataagttcaagtttccaaatggctattggattttttggtttttggagaaatgctgtcaggttagtatctgtaacttc |
8683619 |
T |
|
| Q |
216 |
ttttgtttcgatttttatgtaaatctttgatttgttatcttatatgttcattgattcattcacaggttccttagtccactttctgtagttccatatgtaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683620 |
ttttgtttcgatttttatgtaaatctttgatttgttatcttatatgttcattgattcattcacaggttccttagtccactttctgtagttccatatgtaa |
8683719 |
T |
|
| Q |
316 |
cattcgctggacttggtctctatcaacttggttttccaatggtgaagaattgaggattaaagaatacaacccttttgattttttgcttcttaacttctct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683720 |
cattcgctggacttggtctctatcaacttggttttccaatggtgaagaattgaggattaaagaatacaacccttttgattttttgcttcttaacttctct |
8683819 |
T |
|
| Q |
416 |
atttatgatttgaaaattaattttgcagcttgcgaaatgtgttgaaattggacttcctgcattaattgttatggttttcatctcac |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683820 |
atttatgatttgaaaattaattttgcagcttgcgaaatgtgttgaaattggacttcctgcattaattgttatggttttcatctcac |
8683905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 47579890 - 47579970
Alignment:
| Q |
278 |
caggttccttagtccactttctgtagttccatatgtaacattcgctggacttggtctctatcaacttggttttccaatggt |
358 |
Q |
| |
|
|||||||||||| ||||||| ||| || || |||||||||||| ||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
47579890 |
caggttccttagcccactttgtgttgtcccttatgtaacattcactggacttggtctctatcatcttggttttcctatggt |
47579970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University