View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_14 (Length: 484)
Name: NF15299_low_14
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 47654279 - 47653823
Alignment:
| Q |
18 |
attatacgggcacaattgaccgaattttattaccaaacttcgtttatctattgtttacggttgccgtttaattttcctttcataattggttgttgttcta |
117 |
Q |
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| T |
47654279 |
attatacgggcacaattgaccgaattttattaccaaactttgtttatctattgtttacggttgccgtttaatttccctttcataattggttgttgttcta |
47654180 |
T |
|
| Q |
118 |
acagtttaattatgttggagatttatgaagagcgccgaaaataacaacaaaccaatgatctaggattacgagatcaaaaatcacatctccatataaaatc |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47654179 |
acagtttatttatgttggagatttatgaagagcgccgaaaataacaacaaaccaacgatctaggattacgagatcaaaaatcatgtctccatataaaatc |
47654080 |
T |
|
| Q |
218 |
tcaatgcattgggtatatgagtcttctcttgtatatatccgacattaaattcattcatatgttgatacgagactaatcactcacacttgaagtcaacaat |
317 |
Q |
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||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47654079 |
tcaatgcattgagtatatgagtcttctcttgcatatatctgacattaaattcattcatatgttgatacgagactaatcactcacacttgaagtcaacaat |
47653980 |
T |
|
| Q |
318 |
cttccctcaagtgtggagctatatccaatacttgcatcaccattattaccggcataataacatgtctcctgactacactaacatgaagacttttgtagca |
417 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47653979 |
cttccctcaagtgtggacctatatccaatacttgcatcaccattattaccggcataataacatgtcttctgactacactaacatgaagacttttgtagca |
47653880 |
T |
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| Q |
418 |
agtccaaacattgagatattcaatttcgctctctcaccaattaaaacttggcctttg |
474 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
47653879 |
agtccaaacattgagatattcactttcgctctctcgccaattaaaacttggcctttg |
47653823 |
T |
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