View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_low_22 (Length: 424)

Name: NF15299_low_22
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_low_22
NF15299_low_22
[»] chr2 (1 HSPs)
chr2 (1-406)||(27149686-27150081)
[»] chr3 (3 HSPs)
chr3 (246-373)||(5498674-5498801)
chr3 (131-207)||(25338259-25338333)
chr3 (27-70)||(42780564-42780607)
[»] chr4 (2 HSPs)
chr4 (246-327)||(24557833-24557914)
chr4 (274-337)||(37743961-37744023)
[»] chr1 (1 HSPs)
chr1 (310-403)||(12190945-12191042)
[»] chr5 (2 HSPs)
chr5 (131-224)||(2794767-2794858)
chr5 (133-212)||(31571915-31571992)
[»] chr8 (1 HSPs)
chr8 (131-207)||(17633779-17633857)
[»] chr7 (1 HSPs)
chr7 (131-204)||(24730634-24730705)
[»] chr6 (1 HSPs)
chr6 (131-168)||(23903730-23903767)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 27149686 - 27150081
Alignment:
Q  1 ttcttttctctttagttacaggtatcaaaatcattgtggcagaattggacattacatggcctttattgggtaacctgtaaatacaccgcccaaattcctt 100  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27149686 ttcttttctctttagttacaggtatcaaaatcatt----------tggacattacatggcctttattgggtaacttgtaaatacaccgcccaaattcctt 27149775  T
Q  101 gaggattatatcaaagagcttctcaattaaaatatgcttgaatcagatatttgtaattggtttggtgtgtttcatgccctatggctagagatcatgttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27149776 gaggattatatcaaagagcttctcaattaaaatatgcttgaatcagatatttgtaattggtttggtgtgtttcatgccctgtggctagagatcatgttat 27149875  T
Q  201 caagctaaacatctcagattcatcatcaaagtggtttcatcaccttgatgaactaatttcatatgtttacttaaaagattgtgtcacagtttttagaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27149876 caagctaaacatctcagattcatcatcaaagtggtttcatcaccttgatgaactaatttcatatgtttacttaaaagattgtgtcacagtttttagaaaa 27149975  T
Q  301 ctgtagaacatagccaatcaagttaatttattttatgaaatctttgaaccgtttaaagaccatcacatattttcctcgctggtactaaactcaaactttt 400  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27149976 ctgtagaatataaccaatcaagttaatttattttatgaaatctttgaaccgtttaaagaccatcacatattttcctcgctggtactaaactcaaactttt 27150075  T

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Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 246 - 373
Target Start/End: Complemental strand, 5498801 - 5498674
Alignment:
Q  246 tgatgaactaatttcatatgtttacttaaaagattgtgtcacagtttttagaaaactgtagaacatagccaatcaagttaatttattttatgaaatcttt 345  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||||||| ||    
T  5498801 tgatgaactaattccatatgtttacttaaaagattgtgtcacagtttttagaaaactgtagaatataactaatcaaattaatttattttatgaaatcgtt 5498702  T
Q  346 gaaccgtttaaagaccatcacatatttt 373  Q
    |||||||||||||||| |||||||||||    
T  5498701 gaaccgtttaaagaccgtcacatatttt 5498674  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 25338259 - 25338333
Alignment:
Q  131 aatatgcttgaatcagatatttgtaattggtttggtgtgtttcatgccctatggctagagatcatgttatcaagcta 207  Q
    |||||||||||||||||| |||| || |||||||||||  |||||||||||||||| |||||||| | |||||||||    
T  25338259 aatatgcttgaatcagatctttgcaactggtttggtgt--ttcatgccctatggctggagatcatctcatcaagcta 25338333  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 42780607 - 42780564
Alignment:
Q  27 aaaatcattgtggcagaattggacattacatggcctttattggg 70  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  42780607 aaaatcactgtggcagaattggacagtacatggactttattggg 42780564  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 24557833 - 24557914
Alignment:
Q  246 tgatgaactaatttcatatgtttacttaaaagattgtgtcacagtttttagaaaactgtagaacatagccaatcaagttaat 327  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  24557833 tgatgaactaattccataagtttacttaaaagattgtgtcacagtttttagaaaactatagaatataaccaatcaagttaat 24557914  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 37743961 - 37744023
Alignment:
Q  274 aaagattgtgtcacagtttttagaaaactgtagaacatagccaatcaagttaatttattttatg 337  Q
    ||||||||||||||| ||||||||||||| || || ||| || |||||||||||||||||||||    
T  37743961 aaagattgtgtcacaatttttagaaaact-taaaaaataaccgatcaagttaatttattttatg 37744023  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 12191042 - 12190945
Alignment:
Q  310 atagccaatcaagttaatttat----tttatgaaatctttgaaccgtttaaagaccatcacatattttcctcgctggtactaaactcaaactttttag 403  Q
    |||| |||||||||||||||||    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  12191042 atagtcaatcaagttaatttatatattttatgaaatcgttgaaccgtttaaagaccataacatattttcctcgatggtactgaactcaaactttttag 12190945  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 2794858 - 2794767
Alignment:
Q  131 aatatgcttgaatcagatatttgtaattggtttggtgtgtttcatgccctatggctagagatcatgttatcaagctaaacatctcagattcatc 224  Q
    |||||||||||||||||| ||||||| ||||||||||| |  ||||| || ||||| |||||||||| |||||| |||||||||||| ||||||    
T  2794858 aatatgcttgaatcagatctttgtaactggtttggtgtat--catgcactctggctggagatcatgtcatcaagttaaacatctcaggttcatc 2794767  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 31571992 - 31571915
Alignment:
Q  133 tatgcttgaatcagatatttgtaattggtttggtgtgtttcatgccctatggctagagatcatgttatcaagctaaacat 212  Q
    |||||||||||||||| ||||||  ||| |||||||  ||||| |||||||||||||||| |||| ||||||||||||||    
T  31571992 tatgcttgaatcagatctttgtatctggcttggtgt--ttcattccctatggctagagataatgtcatcaagctaaacat 31571915  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 17633779 - 17633857
Alignment:
Q  131 aatatgcttgaatcagatatttgtaattggtttggtgtgt--ttcatgccctatggctagagatcatgttatcaagcta 207  Q
    |||||||||||||||||| |||| || ||||||||||| |  | |||||||||||||| |||||||||| |||||||||    
T  17633779 aatatgcttgaatcagatctttgcaactggtttggtgtttcatgcatgccctatggctggagatcatgtcatcaagcta 17633857  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 24730634 - 24730705
Alignment:
Q  131 aatatgcttgaatcagatatttgtaattggtttggtgtgtttcatgccctatggctagagatcatgttatcaag 204  Q
    ||||||||||||||| || ||||||| |||||||  |||||||||||| |||| ||| ||||||||| ||||||    
T  24730634 aatatgcttgaatcaaatctttgtaactggtttg--gtgtttcatgccttatgtctatagatcatgtcatcaag 24730705  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 23903730 - 23903767
Alignment:
Q  131 aatatgcttgaatcagatatttgtaattggtttggtgt 168  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  23903730 aatatgcttgaatcagatctttgtaactggtttggtgt 23903767  T

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