View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_23 (Length: 418)
Name: NF15299_low_23
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 45317487 - 45317892
Alignment:
| Q |
1 |
atatctaaatatagttcaataaaaggactgaatagtaaaaagataaattacttgccagaatcagaaactttaagcagaggtaccaagtaacagacacatt |
100 |
Q |
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| T |
45317487 |
atatctaaatatagttcaataaaaggactgaatagtaaaaagataaattacttgccagaatcagaaactttaagcagaggtaccaagtaacagacacatt |
45317586 |
T |
|
| Q |
101 |
acttatactagatatgtatatatttttatagagcaataattt----atatgtagcaaaataataacaaaaaatacttaccttgttttgtgaagactgaaa |
196 |
Q |
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| T |
45317587 |
acttatactagatatgtatatatttttatagagcaataatttatttatatgtagcaaaataataacaaaaaatacttaccttgttttgtgaagactgaaa |
45317686 |
T |
|
| Q |
197 |
gatagtttagtactagtatcatacatagaagtggtcttcaagatgggggcactgcaaatggatttttccgaaggtctgaacaagttattatcaggactca |
296 |
Q |
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| T |
45317687 |
gatagtttagtactagtatcatacatagaagtggtcttcaagatgggggcactgcaaatggatttttccgaaggtctgaacaagttattatcaggactca |
45317786 |
T |
|
| Q |
297 |
agtgaagtccaagactgcaagcagccatagccacagccatttttcaaagagttgagggaattgaaaaagagagnnnnnnngttatatgttcaaagagaca |
396 |
Q |
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| T |
45317787 |
agtgaagtccaagactgcaagcagccatagccacagccatttttcaaagagttgagggaattgaaaaagagagaaaaaaagttatatgttcaaagagaca |
45317886 |
T |
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| Q |
397 |
gaagac |
402 |
Q |
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|||||| |
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| T |
45317887 |
gaagac |
45317892 |
T |
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