View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15299_low_25 (Length: 411)
Name: NF15299_low_25
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 48275611 - 48275196
Alignment:
| Q |
1 |
aaggttaagaaggtgaactatattattagttgatccatagttcaaaaatattcatcgatttaaggatnnnnnnn------------tcagtatttcacta |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48275611 |
aaggttaagaaggtgaactatattattagttgatccatagttcaaaaatattcatcgatttaaggataaaaaataaattaaaaaaatcagtatttcacta |
48275512 |
T |
|
| Q |
89 |
tgcataaatttattttcaataattagatcatcaagtcttatcatatttcatttatttcaaaaatagccataagtttaccttctacgtaatac----aatt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
48275511 |
tgcataaatttattttcaataattagatcatcaagtcttatcatatttcatttaattcaaaaatagccataagtttaccttctacgtaatactacaaagt |
48275412 |
T |
|
| Q |
185 |
acgccataaatttcatccattttttcaaaataaaaatgagctcaaaacaattttgatagttgaacacaaagatatcatcacatcacaatcacactaattt |
284 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48275411 |
atgccataaatttcatccattttttcaaaataaaaatgagctcaaaacaattttgatagttgaacacaaagatatcatcacatcacaatcacactaattt |
48275312 |
T |
|
| Q |
285 |
aaggacatgcgtatttgttgaggtttttagcttttttgtctaatgagttgtggaaaatggatttgtcactcaaattgcgggcttatctttaaaatttgtc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48275311 |
aaggacatgcgtatttgttgaggtttttagcttttttgtctaatgagttgtggaaaatggatttgtcactcaaattgcgggcttatctttaaaatttgtc |
48275212 |
T |
|
| Q |
385 |
ttcttattcttttctc |
400 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
48275211 |
ttcttattcttttctc |
48275196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University