View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15299_low_27 (Length: 408)
Name: NF15299_low_27
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 42716960 - 42717346
Alignment:
| Q |
17 |
atagcaaccaatttgctatttgaaataatgcaggaagtggtgttgcttggtgctcaatctgtttaattttttcccagttcttgatatgcttatcagctta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42716960 |
atagcaaccaatttgctatttgaaataatgcaggaagtggtgttgcttggtgctcaatctgtttaattttttcccagttcttgatatgcttatcagctta |
42717059 |
T |
|
| Q |
117 |
gtcctgaggacaaagatttattgattcagcggttatcaatgtggtgattggtgtttgatattccggaagaagttcaatttcaaattgggtgctcgttagt |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42717060 |
gtcccgaggacaaagatttattgattcagcggttatcaatgtggtgattggtgtttgttattccggaagaagttcaatttcaaattgggtgctcgttagt |
42717159 |
T |
|
| Q |
217 |
ctactttatgtcctaaagaaggcccatggtgagattaatcccccgacttttcaaagtattgctgcgtggagtgaaataaagagatacactcatatattat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42717160 |
ctactttatgtcctaaagaaggcccatggtgagattaatcccccgacttttcaaagtattgctgcgtggagtgaaataaagagatacactcatatattat |
42717259 |
T |
|
| Q |
317 |
ttctcttaaaaaatttccttttatgttatctccactgtattaatcataactgttccattcctgcaggtcaaatcctttcatctcact |
403 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42717260 |
ttctcttaaaaaatttccttgtatgttatctccactgtattaatcataactgttccattcctgcaggtcaaatcctttcatttcact |
42717346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University