View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_29 (Length: 396)
Name: NF15299_low_29
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 38031917 - 38031749
Alignment:
| Q |
20 |
cagctcaagtacatgacagtcctcaaagactcctctgcctgtttggccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38031917 |
cagctcaagtacatgacagtcctcaaagactcctctgcctgtttggccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattct |
38031818 |
T |
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| Q |
120 |
ttgcttgagaaattgatctaacacggtttttaaggtgttgttgagcttgtcttaaaccatagttccatc |
188 |
Q |
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| T |
38031817 |
ttgcttgagaaattgatctaacacggtttttaaggtgttgttgagcttgtcttaaaccatagttccatc |
38031749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 204 - 389
Target Start/End: Complemental strand, 38026919 - 38026734
Alignment:
| Q |
204 |
acaatataattagatccaaattaaaagctatgactagttgtcatttatctctgaaatcatttcatatgtgatcaagatataaaaaccattacacccaatt |
303 |
Q |
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| T |
38026919 |
acaatataattagatccaaattaaaagctataactagttgtcatttatctctgaaatcatttaatatgtgatcaagatataaaaaccattacacccaatt |
38026820 |
T |
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| Q |
304 |
atactgaataaaactatatttgcatttacatagaatagtatttcacaaccgacatggttcaagcagatcaaattagattcatctca |
389 |
Q |
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| T |
38026819 |
atattgaataaaactatatttgcatttacatagaatagtatttcacaacctacatggttcaagcagaacaaatcagattcatctca |
38026734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 38003667 - 38003500
Alignment:
| Q |
19 |
acagctcaagtacatgacagtcctcaaagactcctctgcctgtttggccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38003667 |
acagctcaagtacatgacagtcctcaaagactcctctgcctgttttgccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattc |
38003568 |
T |
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| Q |
119 |
tttgcttgagaaattgatctaacacggtttttaaggtgttgttgagcttgtcttaaaccatagttcca |
186 |
Q |
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| T |
38003567 |
tttgcttgagaaattgatctaacacggtttttaaggtgttgttgagcttgtcttaaagcataattcca |
38003500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 38025177 - 38025011
Alignment:
| Q |
20 |
cagctcaagtacatgacagtcctcaaagactcctctgcctgtttggccttcttctcatccttaagtttgttagcaagaaatgaagaagaagagaaattct |
119 |
Q |
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||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
38025177 |
cagctcaagtacatgacagtccttagagactcctctgcttgtttggacttcttctcatccttaaatttggtagcaagaaatgaagaagaagagaaattct |
38025078 |
T |
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| Q |
120 |
ttgcttgagaaattgatctaacacggtttttaaggtgttgttgagcttgtcttaaaccatagttcca |
186 |
Q |
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| T |
38025077 |
ttgcttgagacattgatttagcacggtttttaaggtgttgttgagcttgtcttaaagcatagttcca |
38025011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 25925395 - 25925455
Alignment:
| Q |
259 |
atcatttcatatgtgatcaagatataaaaaccattacacccaattatactgaataaaacta |
319 |
Q |
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|||| ||||||||||||||||||||||||| ||||| || ||| |||||| ||||| |||| |
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| T |
25925395 |
atcaattcatatgtgatcaagatataaaaatcattaaacacaaatatactaaataatacta |
25925455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 38427535 - 38427614
Alignment:
| Q |
300 |
aattatactgaataaaactatatttgcatttacatagaatagtatttcacaaccgacatggttcaagcagatcaaattag |
379 |
Q |
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||||| |||||||||||||| ||||||||| | || |||||| |||||||||| |||||| |||| ||||| |||||| |
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| T |
38427535 |
aattaaactgaataaaactaaatttgcattcatattaaatagtgtttcacaacctacatggctcaaatagatccaattag |
38427614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 6298302 - 6298262
Alignment:
| Q |
254 |
ctgaaatcatttcatatgtgatcaagatataaaaaccatta |
294 |
Q |
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|||||||||||| | |||||||||||||||||||| ||||| |
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| T |
6298302 |
ctgaaatcattttacatgtgatcaagatataaaaagcatta |
6298262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 26157068 - 26157105
Alignment:
| Q |
260 |
tcatttcatatgtgatcaagatataaaaaccattacac |
297 |
Q |
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|||||| |||||||||||||||||||||| |||||||| |
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| T |
26157068 |
tcatttaatatgtgatcaagatataaaaagcattacac |
26157105 |
T |
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