View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_3 (Length: 662)
Name: NF15299_low_3
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_3 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 10 - 662
Target Start/End: Complemental strand, 12635863 - 12635212
Alignment:
| Q |
10 |
agaagcaaaggcagggagagggaacacgaagagaagttaataactcttgtgagagagcgaacaccattgaagaagaaactcaaaaggagttttggattga |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
12635863 |
agaatcaaaggcagggagagggaacacgaagagaagttaataactcttgtgagagagcgaacaccatcgaagaaaaaactcaaaaggagttttggattga |
12635764 |
T |
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| Q |
110 |
cggatttgtggtggatatctagggtaggtaaacacaatattggatagtgattatatttgagagaggaaagaagataaattaataaggatttctcttggta |
209 |
Q |
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| T |
12635763 |
cggatttgtggtggatatctagggtaggtaaacgcaatattggatagtgattatatttgagagaggaaagaagataaattaataaggatt-ctcttggta |
12635665 |
T |
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| Q |
210 |
ggaaattgaagatgattttgggcgccaatgtatggtggccgttgatttcaatctatgctaatctcaaccattccatatgttataatgactggcgtgtttc |
309 |
Q |
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| T |
12635664 |
ggaaattgaagatgattttgggcgccaatgtatggtggccgttgatttcaatctatgctaatctcaaccattccatatgttataatgactggcgtgtttc |
12635565 |
T |
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| Q |
310 |
caatgcagtaaataccaatgagctttgtaattaccatcataaaagcagtgctccccttcaggttccaataaacatcataccctctttccattcacttcag |
409 |
Q |
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| T |
12635564 |
caatgcagtaaataccaatgagctttgtaattaccatcataaaagcagtgctccccttcaggttccaataaacatcataccctctttccattcacttcag |
12635465 |
T |
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| Q |
410 |
taacataatagaggcccctatgtcaataaagtcactccaagaattgtatcagtaagaagataaccagttttaacgttgcccatggttccaatgccatcaa |
509 |
Q |
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| T |
12635464 |
taacataatagaggcccctatgtcaataaagtcactccaagaattgtatcagtaagaagataaccagttttaacgttgcccatggttccaatgccatcaa |
12635365 |
T |
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| Q |
510 |
aggagtatctagctccgactttgaatcttttgtcgtgggcaagactattgtcgcatgtgcagttcacttcctctttcaatagtaatcgggtccaattcat |
609 |
Q |
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| T |
12635364 |
aggtgtatctagctccgactttgaatcttttgtcgtgggcaagactattgtcgcatgtgcagttcacttcctctttcaatagtaatcgggtccaattcat |
12635265 |
T |
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| Q |
610 |
ccatctaggactttaatcgatacaggtttgaatcaaaggaacaatggtttgat |
662 |
Q |
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| T |
12635264 |
ccatctaggactttaatcgatacaggtttgaatcaaaggaacaatagtttgat |
12635212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 575 - 662
Target Start/End: Original strand, 25432723 - 25432811
Alignment:
| Q |
575 |
acttcctctttcaatagtaatcgggtccaattcatccatctaggactttaatcgatacaggtttgaatcaaaggaa-caatggtttgat |
662 |
Q |
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| T |
25432723 |
acttcctctttcaatagtaatctggtccaattcatccatctaggactttaatcaatacaggtttcaatcacatgaatcaatggtttgat |
25432811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 38511257 - 38511200
Alignment:
| Q |
221 |
atgattttgggcgccaatgtatggtggccgttgatttcaatctatgctaatctcaacc |
278 |
Q |
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| T |
38511257 |
atgattttgggcgccaatgtttggtggccgttgatttcaatctatgctaatctcaacc |
38511200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 37222999 - 37222948
Alignment:
| Q |
226 |
tttgggcgccaatgtatggtggccgttgatttcaatctatgctaatctcaac |
277 |
Q |
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| T |
37222999 |
tttgggcgccaatgtttgatggccgttaatttcaatttatgctaatctcaac |
37222948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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