View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_33 (Length: 362)
Name: NF15299_low_33
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 81 - 352
Target Start/End: Original strand, 42802941 - 42803212
Alignment:
| Q |
81 |
gagagggggaaattgaaagtttacatccataggttcatgaatttcagctacagagtttgaacgtggccaccagcttcaccctttctcttccactcctcag |
180 |
Q |
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| T |
42802941 |
gagagggggaaattgaaagtttacagccataggttcatgaatttcagctacagagtttgaacgaggccaccagcttcaccctttctcttccactcctcag |
42803040 |
T |
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| Q |
181 |
ccgtcgtttccatgctttcttcactccaacaacattgttcctctactcgttcatctgcatgcatagcaacccttctcaaagcttgcaagagaatccaaca |
280 |
Q |
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|||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42803041 |
ccgtcgtttccatgctttcttcgctacaacaacattgttccgctactcgttcatctgcatgcataacaacccttctcaaagcttgcaagagaatccaaca |
42803140 |
T |
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| Q |
281 |
tcttcaacaagttcacgcttccatcattcaaagaggccttgaacaagaccaagttctcatttccaatttcat |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42803141 |
tcttcaacaagttcacgcttccatcattcaaagaggccttgaacaagaccaagttctcatttccaatttcat |
42803212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 180 - 360
Target Start/End: Original strand, 42760638 - 42760818
Alignment:
| Q |
180 |
gccgtcgtttccatgctttcttcactccaacaacattgttcctctactcgttcatctgcatgcatagcaacccttctcaaagcttgcaagagaatccaac |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42760638 |
gccgtcgtttccatgctttcttcactccaacaacattgttcctctactcgttcatctgcatgcatagcaacccttctcaaagcttgcaagagaatccaac |
42760737 |
T |
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| Q |
280 |
atcttcaacaagttcacgcttccatcattcaaagaggccttgaacaagaccaagttctcatttccaatttcatctcactcg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |
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| T |
42760738 |
atcttcaacaagttcacgcttccatcattcaaagaggccttgaacaagaccagttcctcatttccaatttcatttcactcg |
42760818 |
T |
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