View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_35 (Length: 350)
Name: NF15299_low_35
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 21 - 344
Target Start/End: Complemental strand, 41920962 - 41920638
Alignment:
| Q |
21 |
gaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagacc |
120 |
Q |
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| T |
41920962 |
gaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagacc |
41920863 |
T |
|
| Q |
121 |
aataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctgacatgtagaaaacacaatcaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920862 |
aataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctgacatgtagaaaacacaatcaa |
41920763 |
T |
|
| Q |
221 |
gttaacaaagttttacttgcataacaagtttcttgtatttaaagggaaa-ttggcttatgtatttgtacagcatgttacacagtagtagttaaaaaaggt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41920762 |
gttaacaaagttttacttgcataacaagtttcttgtatttaaagggaaatttggcttatgtatttgtacagcatgttacacagtagtagttgaaaaaggt |
41920663 |
T |
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| Q |
320 |
atacatttaaatacatattcttcga |
344 |
Q |
| |
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||||||||||||||||||| ||||| |
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| T |
41920662 |
atacatttaaatacatattattcga |
41920638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 26829814 - 26829966
Alignment:
| Q |
47 |
gctttagccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgca |
146 |
Q |
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| T |
26829814 |
gctttacccttgaaagcatctccaagtttttcagtgacaatccattcattcactctactagcctctagtagaccaataatcgttgcctttgttcgatgaa |
26829913 |
T |
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| Q |
147 |
gagacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctg |
199 |
Q |
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| T |
26829914 |
gagacatggtattctcgaataaaatccaaaagacaagtaaatggaatgacctg |
26829966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 26782932 - 26783078
Alignment:
| Q |
54 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacat |
153 |
Q |
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|||| ||||||| ||||||||| || |||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||||||||| || | |||||| |
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| T |
26782932 |
ccttaagagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttgctcgatttaaagacat |
26783031 |
T |
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| Q |
154 |
gacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
200 |
Q |
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| T |
26783032 |
ggtattctcaaagagaatccaaaatacaactaaatgcaatgacctga |
26783078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 26789299 - 26789451
Alignment:
| Q |
48 |
ctttagccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcag |
147 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| || |||||||||| ||||| |||| || ||| || |
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| T |
26789299 |
ctttacccttgagagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagcagaccaataattgttgcttttgttcgatgtag |
26789398 |
T |
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| Q |
148 |
agacatgacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
200 |
Q |
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|| ||| ||| ||||| |||| |||||||| | ||||| || |||||||| |
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| T |
26789399 |
agctatggtattttcaaagagaacccaaaagataactaaatagaatgacctga |
26789451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 26816137 - 26816260
Alignment:
| Q |
56 |
ttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatga |
155 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| |||| || ||| |||| ||| |
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| T |
26816137 |
ttgagagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagtagaccaataattgttgcttttgttcgatgtagagctatgg |
26816236 |
T |
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| Q |
156 |
cattctcaaatagaatccaaaaga |
179 |
Q |
| |
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||| ||||| |||| |||||||| |
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| T |
26816237 |
tattttcaaagagaacccaaaaga |
26816260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 2301264 - 2301218
Alignment:
| Q |
54 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcact |
100 |
Q |
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|||| ||||||| ||||||||| | |||||||||||||||||||||| |
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| T |
2301264 |
ccttaagagcatttccaagttttttagtgacaatccattcattcact |
2301218 |
T |
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