View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15299_low_38 (Length: 322)
Name: NF15299_low_38
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_38 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 28729290 - 28728996
Alignment:
| Q |
12 |
aagaagttttgaaagttaagtcattgtttattacattaaagttactcaaagtatatgtagtattctcttccagaatcttgtcatagacagctttgtaacc |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28729290 |
aagaagttttgaaagctaagtcattgtttagtacattaaagttactcaaagtatatgtagtattctcttcctgaatcttgtcatagacagctttgtaacc |
28729191 |
T |
|
| Q |
112 |
agagggaataataacttgaatatcattaccctagaaatagtatatattagtatgataataaaaggaaaaatacaaaacaacaaagtttaagttaatattc |
211 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28729190 |
agtaggaataataacttgaatatcattaccctagaaatagtatatattagtatgataataaaaggaaaaaaacaaaacaacaaagtttaagttaatattc |
28729091 |
T |
|
| Q |
212 |
atcccatcaccttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagttagtttc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28729090 |
atcccatcaccttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatccttgaccttaacagttagtttc |
28728996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 28719896 - 28719600
Alignment:
| Q |
13 |
agaagttttgaaagttaagtcatt---gtttattacattaaagttactcaaagtatatgtagtattctcttccagaatcttgtcatagacagctttgtaa |
109 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28719896 |
agaagttttgaaagctaagtcattattgtttagtacattaaagttactcaaagtatatgtagtattctcttccagaatcttgtcatagacagctttgtaa |
28719797 |
T |
|
| Q |
110 |
ccagagggaataataacttgaatatcattaccctagaaatagtatatattagtatgataataaaaggaaaaatacaaaacaacaaagtttaagttaatat |
209 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28719796 |
ccagtgggaataataacttgaatatcattaccctagaaatagtatatattagtatgataataaaaggaaaaaaacaaaacaacaaagtttaagttaatat |
28719697 |
T |
|
| Q |
210 |
tcatcccatcaccttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagttagtttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
28719696 |
tcatcccatcaccttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttattcttgaccttaacagctagtttc |
28719600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 13057928 - 13057859
Alignment:
| Q |
236 |
tcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagttagtttc |
306 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
13057928 |
tcaccagctccaagtgttccttgccatccttcacaacagtccatttatc-ttgaccttcacagctagtttc |
13057859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 13040506 - 13040436
Alignment:
| Q |
236 |
tcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagttagtttc |
306 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||| ||||||| |
|
|
| T |
13040506 |
tcaccaactccaagtgttccttgccatccttcacaacggtccatttatccttgaccttcacaactagtttc |
13040436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 27134436 - 27134517
Alignment:
| Q |
220 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagtta |
301 |
Q |
| |
|
|||||| |||||||||| | || ||||| ||||||||||||||| || ||||||||||| || |||||||| ||||||||| |
|
|
| T |
27134436 |
accttaacatcaacaataatcatctccagatgttccttgccatccttaacaacagtccacttgtctttgactctaacagtta |
27134517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 26406297 - 26406216
Alignment:
| Q |
220 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagtta |
301 |
Q |
| |
|
|||||| |||||||||| | || ||||| ||||||||||||||| || ||||||||||| || |||||||| ||||||||| |
|
|
| T |
26406297 |
accttagcatcaacaataatcatctccagatgttccttgccatccttaacaacagtccacttgtctttgactctaacagtta |
26406216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 10234630 - 10234700
Alignment:
| Q |
220 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgac |
290 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||| |
|
|
| T |
10234630 |
accttagcatcaacaatcagcaattccaaatgttcttttccatccttcactactgtccatttatctttgac |
10234700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 32253794 - 32253717
Alignment:
| Q |
229 |
tcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgaccttaacagttagtttc |
306 |
Q |
| |
|
|||||||| |||| |||| ||| ||||| |||||||| |||||||||||||| ||||| || || |||| ||||||| |
|
|
| T |
32253794 |
tcaacaattaccaattccagatgctcctttccatcttttacaacagtccatttgtctttaactttcacaggtagtttc |
32253717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 8337352 - 8337422
Alignment:
| Q |
220 |
accttatcatcaacaatcaccagctccaaatgttccttgccatctttcacaacagtccatttatctttgac |
290 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||| || ||||| ||||| | ||||||||||||||||| |
|
|
| T |
8337352 |
accttagcatcaacaatcagcaattccaaatgttcttttccatccttcactgctgtccatttatctttgac |
8337422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University