View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_44 (Length: 302)
Name: NF15299_low_44
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 13287790 - 13287511
Alignment:
| Q |
18 |
tggcaaagggaggctgagattttaaggcaacaactacaaagtctacaggaaaaccataggtacaaccttcaactaattcattcagcatttttt--caata |
115 |
Q |
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| T |
13287790 |
tggcaaagggaggcagacattttaaggcagcaactacaaagtctacaagaaaaccataggtaaaaccttcaactaattcattcagcattttttttcaata |
13287691 |
T |
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| Q |
116 |
tttctattcattaagctccatgtatgagaacactaacattttgagctcataggcagttgatgggagaacagctttatggtttgagtatcagaaacctaca |
215 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13287690 |
tttctattcattaagctccttgtatgagagcactaacattttgagctcataggcaattgatgggagaacagctttatggtttgagtatcagaaacctaca |
13287591 |
T |
|
| Q |
216 |
agacctagagagtcaactggagcttagcctccaaggagttcgcatgaaaaaggtcaagttcctattacttactacctatg |
295 |
Q |
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||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13287590 |
agacctagagagtcagctggaacttagcctacaaggagttcgcatgaaaaaggtcaagttcctattacttactacctatg |
13287511 |
T |
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