View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_47 (Length: 285)
Name: NF15299_low_47
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 126 - 281
Target Start/End: Complemental strand, 11647270 - 11647115
Alignment:
| Q |
126 |
ccctgccatatcctttttgcaacctatttattatttagattatagttattcattttctttacaaatgcattctacaaatgcaatatttttgtctgatata |
225 |
Q |
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| T |
11647270 |
ccctgccatatcctttttgcaacctatttattatttagattatagttattcattttctttacaaatgcattctacaaatgcaatctttttgtctggtata |
11647171 |
T |
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| Q |
226 |
caaatgcattcttttatggacaaaactttacaactctcttattttcatgtgttctt |
281 |
Q |
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| T |
11647170 |
caaatgcattcttttatgcacaaaactttaaaactctcttattttcatgtgttctt |
11647115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 11647495 - 11647379
Alignment:
| Q |
7 |
cctctttcctcatttttataacaagaatatttgcttagctacatttgtgataattcctcattcaaagcttagttttcaaacggaacatctgcactttgca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||||||||||||||||||||||||| |||||||| |||||| |
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| T |
11647495 |
cctctttcctcatttttataacaagaatatttgcttaggtgcatttgtgacaattccgcattcaaagcttagttttcaaacggagcatctgcaatttgca |
11647396 |
T |
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| Q |
107 |
caagtgagtagcagagt |
123 |
Q |
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| T |
11647395 |
cgagtgagtagcagagt |
11647379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 121 - 281
Target Start/End: Complemental strand, 2040724 - 2040565
Alignment:
| Q |
121 |
agttgccctgccatatcctttttgcaacctatttattatttagattatagttattcattttctttacaaatgcattctacaaatgcaatatttttgtctg |
220 |
Q |
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| T |
2040724 |
agttgccctgccatatcctttttgcaacctatttattatttagattatagttattcattttctttacaaatgcattctgcaaatgcaatctttttgtctg |
2040625 |
T |
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| Q |
221 |
atatacaaatgcattcttttatggacaaaactttacaactctcttattttcatgtgttctt |
281 |
Q |
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| T |
2040624 |
gtatacaaatgcattattttatggacaaaactttacaactct-ttattttcatgtgttctt |
2040565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 2040943 - 2040827
Alignment:
| Q |
7 |
cctctttcctcatttttataacaagaatatttgcttagctacatttgtgataattcctcattcaaagcttagttttcaaacggaacatctgcactttgca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2040943 |
cctctttcctcatttttataacaagaatatttgcttagctacatttgtgacaattcctcattcaaagcttagttttcaaacggagcatctgcactttgca |
2040844 |
T |
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| Q |
107 |
caagtgagtagcagagt |
123 |
Q |
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| T |
2040843 |
caagtgagtagcagagt |
2040827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 32075177 - 32075121
Alignment:
| Q |
123 |
ttgccctgccatatcctttttgcaacctatttattatttagattatagttattcatt |
179 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
32075177 |
ttgcccttccatatcctttttgcaacctatttattatttagagtatagttactcatt |
32075121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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