View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_48 (Length: 275)
Name: NF15299_low_48
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 41931739 - 41932002
Alignment:
| Q |
1 |
ttgctacacaaaatagataaataattaaacaaataaaggtagttgcttctttcattttaggaaaggaattaatggagaaaatcaatgaaacttactcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41931739 |
ttgctacacaaaatagataaataattaaacaaataaagatagttgcttctttcattttaggaaaggaattaatggagaaaatcaatgaaacttactcttg |
41931838 |
T |
|
| Q |
101 |
agatactctgctgcctttggaaatgtcttcaatagctgaaaagtttcagagaaaatatatgccttagttatagaaatttcagatcacactttctaatcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41931839 |
agatactctgctgcctttggaaatgtcttcaatagctgaaaagtttcagagaaaatatatgccttagttatagaaatttcagatcacactttctaatcct |
41931938 |
T |
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| Q |
201 |
tcctaataatacattgctaccacacgtatcattaattcaatagatgaacctcaggtatcttctt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41931939 |
tcctaataatacattgctaccacacgtatcattaattcaatagatgaacctcaggtatcttctt |
41932002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 2202166 - 2202110
Alignment:
| Q |
90 |
acttactcttgagatactctgctgcctttggaaatgtcttcaatagctgaaaagttt |
146 |
Q |
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| T |
2202166 |
acttactcttgagatattttgttgcatttggaaatgtcttcaatagctgaaaagttt |
2202110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 2214761 - 2214705
Alignment:
| Q |
90 |
acttactcttgagatactctgctgcctttggaaatgtcttcaatagctgaaaagttt |
146 |
Q |
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|||||||||||||||| | | ||| ||||||||||||||||||||||||||||||| |
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| T |
2214761 |
acttactcttgagatatttggttgcatttggaaatgtcttcaatagctgaaaagttt |
2214705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 2214614 - 2214581
Alignment:
| Q |
231 |
attaattcaatagatgaacctcaggtatcttctt |
264 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
2214614 |
attatttcaatagatgaacctcaggtatcttctt |
2214581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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