View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_5 (Length: 616)
Name: NF15299_low_5
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 290 - 600
Target Start/End: Complemental strand, 8830156 - 8829847
Alignment:
| Q |
290 |
cataactaactctacaaaatcatacatcacaatatagttcttttatggaacttactagctaaatttaaaaaagtatacactatctagatgaaaagtacac |
389 |
Q |
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| T |
8830156 |
cataactaactctacaaaatcatacatcacagtatagttcttttatggaacttactagctaaatttaagaaagtatacactatctagatgaaaagtacac |
8830057 |
T |
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| Q |
390 |
agttaaatttgttcatactctaattttcaaggccataagttttaaaatgtggcnnnnnnnncttgaaccaattgagaagctcatttaaataagattatga |
489 |
Q |
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| T |
8830056 |
agctaaatttgttcctactctaattttcaaggccataagttt-aaaatgtggcaaaaaaaacttgaaccaattgagaagctcattgaaataagattatga |
8829958 |
T |
|
| Q |
490 |
atcatagatcatgattttcctctaccaatcgttattattgaagggaattaataatacatcttattttttgcaaaccaggtgaagaaatcattcacggttt |
589 |
Q |
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| T |
8829957 |
atcatagatcatgattttcctctaccaattgttattattgaagggaattaataatacatcttattttttgcaaaccaggtgaagaaatcattcacggttt |
8829858 |
T |
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| Q |
590 |
tatcttccaaa |
600 |
Q |
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|||||| |||| |
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| T |
8829857 |
tatctttcaaa |
8829847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 8830574 - 8830303
Alignment:
| Q |
10 |
aatactagagaggctaccatcaaagctttaggccaacgcaggttagactttcctttgatagtatttttactttcatttgtcatcaatatttttaatgtaa |
109 |
Q |
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| T |
8830574 |
aatactagagaggctaccatcaaagctttaggccaacgcaggttagacttttctttgatagtatttttactttcatatgtcatcaatatttttaatgtga |
8830475 |
T |
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| Q |
110 |
aaatttgattgatattctcgactttgacaaacaatttgcatgttcagaagcatgattgaagcagcagcgacaacaatagtggttgtaatgtaagtaataa |
209 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
8830474 |
aaatttgattgatattctcgactttgacacacaatttgcatgttcagaagcatgattgaagcagcagcaacaacagtagtggttgtaatgtaagtaataa |
8830375 |
T |
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| Q |
210 |
tattatagaatagattaaatgattcatggatgtatagttgttttataatctattgcgcgcgcgcacatacac |
281 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |
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| T |
8830374 |
tattatagaatagagtaaatgattcatggatgtgtagttgttttataatctattgcgcgcgcacacacacac |
8830303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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