View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_low_50 (Length: 272)

Name: NF15299_low_50
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_low_50
NF15299_low_50
[»] chr2 (17 HSPs)
chr2 (1-102)||(22379312-22379413)
chr2 (1-102)||(22564755-22564855)
chr2 (1-102)||(3192085-3192186)
chr2 (162-252)||(22564924-22565013)
chr2 (1-102)||(27608076-27608178)
chr2 (4-102)||(24185483-24185581)
chr2 (3-102)||(33527690-33527789)
chr2 (1-96)||(10194003-10194098)
chr2 (29-102)||(3191848-3191921)
chr2 (1-102)||(34427013-34427114)
chr2 (12-102)||(38903783-38903873)
chr2 (1-83)||(17595988-17596070)
chr2 (24-75)||(41214211-41214262)
chr2 (1-102)||(19381351-19381453)
chr2 (1-84)||(13346721-13346804)
chr2 (46-99)||(17555948-17556001)
chr2 (112-144)||(3191938-3191970)
[»] chr8 (8 HSPs)
chr8 (1-102)||(19195920-19196022)
chr8 (3-95)||(14723381-14723473)
chr8 (21-102)||(18921131-18921212)
chr8 (13-94)||(14774843-14774924)
chr8 (3-92)||(28184370-28184459)
chr8 (21-102)||(31451595-31451676)
chr8 (1-96)||(12658174-12658269)
chr8 (13-87)||(11306432-11306506)
[»] scaffold0301 (1 HSPs)
scaffold0301 (1-102)||(4874-4975)
[»] chr4 (8 HSPs)
chr4 (3-102)||(11673468-11673567)
chr4 (3-102)||(55468934-55469032)
chr4 (13-94)||(8500211-8500292)
chr4 (1-58)||(9047443-9047500)
chr4 (1-102)||(43096102-43096203)
chr4 (13-95)||(9217766-9217847)
chr4 (13-94)||(48710746-48710827)
chr4 (16-96)||(27449219-27449299)
[»] chr3 (10 HSPs)
chr3 (3-96)||(7578623-7578716)
chr3 (1-102)||(9701517-9701618)
chr3 (3-102)||(31136838-31136937)
chr3 (4-102)||(14960387-14960485)
chr3 (1-94)||(27537926-27538019)
chr3 (1-102)||(22721115-22721216)
chr3 (3-91)||(1344109-1344191)
chr3 (27-92)||(41517764-41517829)
chr3 (25-94)||(13598773-13598842)
chr3 (66-102)||(29859829-29859865)
[»] chr1 (9 HSPs)
chr1 (1-86)||(48920966-48921051)
chr1 (10-102)||(22634787-22634879)
chr1 (3-102)||(34428461-34428560)
chr1 (4-102)||(19280569-19280667)
chr1 (1-102)||(45992411-45992512)
chr1 (4-102)||(40679159-40679257)
chr1 (186-252)||(19795250-19795315)
chr1 (4-78)||(12213181-12213255)
chr1 (4-76)||(46262205-46262277)
[»] scaffold0292 (1 HSPs)
scaffold0292 (10-102)||(21565-21657)
[»] scaffold0128 (1 HSPs)
scaffold0128 (10-102)||(23375-23467)
[»] chr7 (9 HSPs)
chr7 (4-102)||(10012870-10012968)
chr7 (1-96)||(37247096-37247191)
chr7 (3-102)||(19921174-19921273)
chr7 (13-94)||(580553-580634)
chr7 (1-102)||(45088712-45088812)
chr7 (20-102)||(36585699-36585781)
chr7 (10-102)||(28603681-28603773)
chr7 (13-51)||(20534828-20534866)
chr7 (13-74)||(13043293-13043354)
[»] scaffold0126 (1 HSPs)
scaffold0126 (4-102)||(43984-44082)
[»] chr6 (5 HSPs)
chr6 (3-102)||(7705815-7705914)
chr6 (64-102)||(34493438-34493476)
chr6 (35-92)||(26268339-26268395)
chr6 (13-69)||(17238679-17238735)
chr6 (112-144)||(34493388-34493420)
[»] scaffold0051 (1 HSPs)
scaffold0051 (10-102)||(62832-62924)
[»] scaffold0664 (1 HSPs)
scaffold0664 (4-78)||(2170-2244)
[»] scaffold0490 (1 HSPs)
scaffold0490 (13-102)||(10215-10304)
[»] scaffold1544 (1 HSPs)
scaffold1544 (1-94)||(1240-1333)
[»] chr5 (6 HSPs)
chr5 (13-94)||(23616832-23616913)
chr5 (13-94)||(23848231-23848312)
chr5 (25-102)||(4151842-4151919)
chr5 (13-102)||(38622938-38623026)
chr5 (66-102)||(23138453-23138489)
chr5 (66-102)||(26229297-26229333)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 22379413 - 22379312
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||    
T  22379413 ttcattaggggagagtacactaggaataggttgggaatgcccaactttagattcaacaccttctgaaaaggttttggcatagtcccccttttctttcttg 22379314  T
Q  101 ta 102  Q
    ||    
T  22379313 ta 22379312  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 22564755 - 22564855
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttg 100  Q
    |||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  22564755 ttcattagtggagagtacactaggaataggttgggaatgcaaaactttagatttaaca-cttttgaaaaggttttggtatattctcccttttctttcttg 22564853  T
Q  101 ta 102  Q
    ||    
T  22564854 ta 22564855  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 3192085 - 3192186
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttg 100  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||  |||||||||| ||| ||||||||| |||||||||||||||    
T  3192085 ttcattagaggagagtacactacgaatatgttgggaatacccaactttagatttaacacattttgaaaagatttaggtatagtctcccttttctttcttg 3192184  T
Q  101 ta 102  Q
    ||    
T  3192185 ta 3192186  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 22564924 - 22565013
Alignment:
Q  162 gagtttaaagatggtaaacatattgtgtatagcaacaatacacactcaaccaatcaaattccacaattttgacactatcatattacaattt 252  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  22564924 gagtttaaagatggtaaacagattgtgtatagcaattatacacactcaaccaatcaaattccacaattttgacac-atcattttacaattt 22565013  T

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Target: chr2; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 27608076 - 27608178
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttg-aaaaggttttggtatagtcccccttttctttctt 99  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||| || |||| ||||||| |||||||||||||||||||||    
T  27608076 ttcattaggggagagtacactaggaataggctgggaatgcccaactttagattcaacaccttctgaaaaacgttttggcatagtcccccttttctttctt 27608175  T
Q  100 gta 102  Q
    |||    
T  27608176 gta 27608178  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 24185581 - 24185483
Alignment:
Q  4 attagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||| |||||||||| ||||||||||||||| |||||||| || || ||||||| |||||||||||||||||||   |||||||||||||||||||||    
T  24185581 attaggggagagtacattaggaataggttgggtatgcccaatttcaggtttaacaacttttgaaaaggttttggttcggtcccccttttctttcttgta 24185483  T

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Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 33527690 - 33527789
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    |||||||| |||||||| |||||| ||||| |  |||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||| |||||    
T  33527690 cattagagaagagtacaataggaacaggttagatatgcccaactttagatttactaccttttgaaaaggttttggtatagtctcccttttcttttttgta 33527789  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 10194098 - 10194003
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttcttt 96  Q
    |||||||| |||||||||| |||||||||||| | ||||  ||| || |||||||||| |||||||||||||||||||||||||| || |||||||    
T  10194098 ttcattaggggagagtacaataggaataggttagaaatgttcaatttcagatttaacaccttttgaaaaggttttggtatagtcctccgtttcttt 10194003  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 3191848 - 3191921
Alignment:
Q  29 ggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  3191848 ggttggaaatgcctaactttaaatttaacatcttttgaaaaggttttggtatagtttcccttctctttcttgta 3191921  T

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Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 34427114 - 34427013
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttg 100  Q
    |||||||  |||||||||| |||||||||||||||||| ||||| || | |||||||| ||||| |||| |||||||| ||||||  ||||||||| |||    
T  34427114 ttcattaagggagagtacaataggaataggttgggaatacccaatttcaaatttaacaccttttaaaaaagttttggtttagtccttcttttcttttttg 34427015  T
Q  101 ta 102  Q
    ||    
T  34427014 ta 34427013  T

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Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 38903783 - 38903873
Alignment:
Q  12 agagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggt-tttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||| |||||||||||| |||||||| || |||||||  ||||| ||||||||| |||||| |||| ||||||||||||||||||    
T  38903783 agagtacactatgaataggttgggcatgcccaatttcagatttattatcttatgaaaaggtatttggtctagt-ccccttttctttcttgta 38903873  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 17596070 - 17595988
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagt 83  Q
    |||||||||  ||| |||||| | |||| |||||||||||| || || |||||||||| ||||| ||||||||||||||||||    
T  17596070 ttcattagaatagattacactggaaataagttgggaatgcctaatttcagatttaacaccttttaaaaaggttttggtatagt 17595988  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 41214262 - 41214211
Alignment:
Q  24 gaataggttgggaatgcccaactttagatttaacatcttttgaaaaggtttt 75  Q
    |||||||||||||||||||||||||||||  | || ||||||||||||||||    
T  41214262 gaataggttgggaatgcccaactttagatacatcaccttttgaaaaggtttt 41214211  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 19381453 - 19381351
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggta-tagtcccccttttctttctt 99  Q
    |||||||| || |||||||||||||||| |||||| |||  ||||| ||||||||  | ||| | |||||||||||| | | |||||||| |||||||||    
T  19381453 ttcattaggggggagtacactaggaataagttgggcatgttcaactatagatttacaaccttctcaaaaggttttggcatttgtccccctattctttctt 19381354  T
Q  100 gta 102  Q
    |||    
T  19381353 gta 19381351  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 13346721 - 13346804
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtc 84  Q
    |||||||| || ||||||| ||| ||||| |||||||| || || ||||||||   || ||||| |||||||||||||||||||    
T  13346721 ttcattaggggtgagtacattagaaatagtttgggaatacctaattttagattcttcaacttttcaaaaggttttggtatagtc 13346804  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 17556001 - 17555948
Alignment:
Q  46 tttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttctt 99  Q
    |||||||||  || |||||||| ||||||||||||||||||||| || ||||||    
T  17556001 tttagatttgtcaacttttgaagaggttttggtatagtccccctcttttttctt 17555948  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 3191938 - 3191970
Alignment:
Q  112 atctaatgaaatggtgcatctgcatctgtttat 144  Q
    ||||||||||||| |||||||||||||||||||    
T  3191938 atctaatgaaatgatgcatctgcatctgtttat 3191970  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 19196022 - 19195920
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttgg-tatagtcccccttttctttctt 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||||||||||| | ||||||||||||||||||||    
T  19196022 ttcattagaggagagtacactaggaataggttgggtatgcccaactttagattcaccaccttttgaaaaggttttggctttagtcccccttttctttctt 19195923  T
Q  100 gta 102  Q
    |||    
T  19195922 gta 19195920  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 14723381 - 14723473
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctt 95  Q
    ||||||||||||||||| || ||| |||||||| ||||||||||||| |||||  |||||| |||||||||||||||||||||||||||||||    
T  14723381 cattagaggagagtacaataagaacaggttgggtatgcccaactttaaatttactatctttcgaaaaggttttggtatagtcccccttttctt 14723473  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 18921212 - 18921131
Alignment:
Q  21 taggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |  ||||||||||||||| |||||||    
T  18921212 taggaataggttgggaatgtccaattttagatttaacaccttttgaaaaggttttagcgtagtcccccttttctatcttgta 18921131  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 14774924 - 14774843
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttct 94  Q
    ||||||| ||||||||||||||| |||||||||||||| | |  || ||||||||||||||||||| |||||||||||||||    
T  14774924 gagtacaataggaataggttgggtatgcccaactttaggtatgtcaccttttgaaaaggttttggtttagtcccccttttct 14774843  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 28184459 - 28184370
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtccccctttt 92  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||   | ||||||||||  ||||||||| |||||||||||    
T  28184459 cattagaggagagtacaataggaataggttgggtatgcccaactttaaattttctaccttttgaaaaatttttggtatggtccccctttt 28184370  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 31451676 - 31451595
Alignment:
Q  21 taggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |  |||||||| |||||| |||||||    
T  31451676 taggaataggttgggaatggccaattttagatttaacaccttttgaaaaggttttagcctagtccccattttctatcttgta 31451595  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 12658269 - 12658174
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttcttt 96  Q
    |||||||| |||||||| | ||||||| |||||| |||| |||| || | |||||||| ||||| |||||||||||||||| ||||||||||||||    
T  12658269 ttcattaggggagagtatattaggaatgggttggcaatgtccaaattcaaatttaacaccttttaaaaaggttttggtataatcccccttttcttt 12658174  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 11306432 - 11306506
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccc 87  Q
    ||||||| |||||||||||| || |||||||||||||| | |  || ||||||||||||||||||| | ||||||    
T  11306432 gagtacaataggaataggttaggtatgcccaactttaggtatgtcaccttttgaaaaggttttggtttggtcccc 11306506  T

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Target: scaffold0301 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 4975 - 4874
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttg 100  Q
    |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||  || |||||||||||||| ||||||||||||||||||||||    
T  4975 ttcattaggggagagtacactaggaataggctgggaatgcctaactttagatttaacactttctgaaaaggttttggcatagtcccccttttctttcttg 4876  T
Q  101 ta 102  Q
    ||    
T  4875 ta 4874  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 11673567 - 11673468
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||   || |||||||||||||||||||   |||||||||||||||||||||    
T  11673567 cattagaggagagtacactagaaataggttgggaatgcccaactttagattctgcaccttttgaaaaggttttggttcggtcccccttttctttcttgta 11673468  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 55468934 - 55469032
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||  | ||||||||||||||||||||||| ||||||||||||| |||||    
T  55468934 cattagaggagagtacaataggaatagattgggtatgcccaactttagatttactaccttttgaaaaggttttggtatag-cccccttttcttttttgta 55469032  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 8500211 - 8500292
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttct 94  Q
    ||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||| || ||||||||||||    
T  8500211 gagtacattaggaataggttggaaatgcccaactttagatttaccaccttttgaaaaggtcttggtctaatcccccttttct 8500292  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9047500 - 9047443
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaaca 58  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9047500 ttcattagaggagagtacactaggaataggttgagaatgcccaactttagatttaaca 9047443  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 43096203 - 43096102
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttg 100  Q
    |||||||| ||||||||||  || ||||||||||| |||||||| || || ||||||| || |||||||||||||||| |  ||||||||||||||||||    
T  43096203 ttcattaggggagagtacatcagaaataggttgggtatgcccaatttcaggtttaacacctattgaaaaggttttggtttgatcccccttttctttcttg 43096104  T
Q  101 ta 102  Q
    ||    
T  43096103 ta 43096102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 9217766 - 9217847
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctt 95  Q
    ||||||| |||||||||||||||||||||||| ||||||| |   | |||||||||||| |||||| | ||||||||||||||    
T  9217766 gagtacaataggaataggttgggaatgcccaattttagatatgtaaccttttgaaaagg-tttggtttggtcccccttttctt 9217847  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 48710746 - 48710827
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttct 94  Q
    ||||||| ||||||||||||||| | |||||||||||| | |   | |||||||||||||||| || | |||||||||||||    
T  48710746 gagtacaataggaataggttgggtaggcccaactttaggtatgttaccttttgaaaaggttttagtttggtcccccttttct 48710827  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 27449219 - 27449299
Alignment:
Q  16 tacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttcttt 96  Q
    |||| |||||||| |||||| ||||||||||||| || |  || |||||||||||||| |||| | |||| ||||||||||    
T  27449219 tacaataggaatatgttgggtatgcccaactttaaatatgccaccttttgaaaaggttctggtgttgtcctccttttcttt 27449299  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 7578623 - 7578716
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttcttt 96  Q
    |||||||||||||| || ||||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||| ||||||||    
T  7578623 cattagaggagagtgcaataggaataggttgggtatgcccaactttagatttactaccttttgaaaaggttttggtatagtcccctttttcttt 7578716  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9701517 - 9701618
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttg 100  Q
    ||||||||||||||||||| ||||||||||||||| ||||| || ||||||||||  | ||||||||||| ||||||||||||||||||||||||| |||    
T  9701517 ttcattagaggagagtacaataggaataggttgggtatgccaaaatttagatttactaccttttgaaaagattttggtatagtcccccttttcttttttg 9701616  T
Q  101 ta 102  Q
    ||    
T  9701617 ta 9701618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 31136838 - 31136937
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||||||| |||||| ||||| || |||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||| |||||    
T  31136838 cattagaggagagtacaataggaacaggttaggtatgcccaactttagatttactaccttttgaaaaggttttggtatagtctcccttttcttttttgta 31136937  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 14960387 - 14960485
Alignment:
Q  4 attagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||| |||||||||| ||||||||||||||| |||||||| || || |||||| ||||||||||||||||||||   |||||||||||||||||||||    
T  14960387 attaggggagagtacattaggaataggttgggtatgcccaatttcaggtttaacgtcttttgaaaaggttttggttcggtcccccttttctttcttgta 14960485  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 27537926 - 27538019
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttct 94  Q
    |||||||||||||||||||||| ||||||||||||  ||||||| || | ||||   | |||||||||||||||||||||||||||||||||||    
T  27537926 ttcattagaggagagtacactaagaataggttgggcttgcccaatttcaaattttgtaccttttgaaaaggttttggtatagtcccccttttct 27538019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 22721216 - 22721115
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttg 100  Q
    ||||| || ||||||||||  |||||||||||||| |||||||| || || ||||||| || |||||||||||||||| | |||||||||||||||| ||    
T  22721216 ttcataaggggagagtacatcaggaataggttgggtatgcccaatttcaggtttaacacctattgaaaaggttttggtttggtcccccttttctttcctg 22721117  T
Q  101 ta 102  Q
    ||    
T  22721116 ta 22721115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 1344191 - 1344109
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttt 91  Q
    ||||||||||||||||| |||||| |||||| | ||||| |||||||        ||||||||||||||||||||||||||||||||||    
T  1344191 cattagaggagagtacaataggaacaggttgagtatgccaaactttact------atcttttgaaaaggttttggtatagtcccccttt 1344109  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 41517829 - 41517764
Alignment:
Q  27 taggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtccccctttt 92  Q
    ||||||||||||||| || || ||||||  || |||||||||||||||||||||||||| ||||||    
T  41517829 taggttgggaatgcctaatttcagattttgcaacttttgaaaaggttttggtatagtcctcctttt 41517764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 13598842 - 13598773
Alignment:
Q  25 aataggttgggaatgcccaactttagatttaacatcttttgaa-aaggttttggtatagtcccccttttct 94  Q
    |||||||| ||||||||||||||||| |||| | |||||| || |||||||||||||| ||| ||||||||    
T  13598842 aataggttaggaatgcccaactttaggtttatc-tctttttaagaaggttttggtataatcctccttttct 13598773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 29859829 - 29859865
Alignment:
Q  66 aaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||  |||||||||||||||||||||||    
T  29859829 aaaaggttttggcctagtcccccttttctttcttgta 29859865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 48920966 - 48921051
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtccc 86  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||    
T  48920966 ttcattagaggagagtacaataggaacaggttgggtatgcccaactttagatttactaccttttgaaaaggttttggtatagtccc 48921051  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 22634787 - 22634879
Alignment:
Q  10 ggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| || |||||||||||  |||||||    
T  22634787 ggagagtacattaggaataggttgggaatgcccaactttagatttaccaccttctgaaaaggttttggtctaatcccccttttccatcttgta 22634879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 34428461 - 34428560
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||||||| |||||| |||||||| ||| ||||||||||||||   | ||||||||||||||||||||| ||||||||||||||| |||||    
T  34428461 cattagaggagagtacaataggaacaggttgggtatgtccaactttagattttctaccttttgaaaaggttttggtatggtcccccttttcttttttgta 34428560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 19280667 - 19280569
Alignment:
Q  4 attagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||| |||||||||| |||||||| |||||| |||||||| || || ||||||| ||||| ||||||||||||| | |||||||||||||||||||||    
T  19280667 attaggggagagtacattaggaatatgttgggtatgcccaatttcaggtttaacaccttttaaaaaggttttggtttggtcccccttttctttcttgta 19280569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 45992411 - 45992512
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttg 100  Q
    |||||||| ||||||||||  ||||||| |||||| |||||||| || |||||||||| || |||||||||||||||| | ||||| |||||||||||||    
T  45992411 ttcattaggggagagtacatcaggaataagttgggtatgcccaatttcagatttaacacctattgaaaaggttttggtttggtccctcttttctttcttg 45992510  T
Q  101 ta 102  Q
    ||    
T  45992511 ta 45992512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 40679159 - 40679257
Alignment:
Q  4 attagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||| || | |||||| |||||||| ||||||||||||||||||   | ||||||||||||||||||| | ||||||||||||||| |||||    
T  40679159 attagaggagattataataggaacaggttgggtatgcccaactttagattttctaccttttgaaaaggttttggtttggtcccccttttcttttttgta 40679257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 19795315 - 19795250
Alignment:
Q  186 gtgtatagcaacaatacacactcaaccaatcaaattccacaattttgacactatcatattacaattt 252  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  19795315 gtgtatagcaactatacacactcaaccaatcaaaatccacaattttgacac-atcatatttcaattt 19795250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 12213181 - 12213255
Alignment:
Q  4 attagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggt 78  Q
    ||||| |||||||||| |||||||| |||||| ||||||||  | || |||||||||||||||||||||||||||    
T  12213181 attaggggagagtacattaggaatatgttgggtatgcccaatatcaggtttaacatcttttgaaaaggttttggt 12213255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 46262277 - 46262205
Alignment:
Q  4 attagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttg 76  Q
    |||||||||||| ||| ||||||||  ||||| ||||||||||| ||||| |||| |||||||||||||||||    
T  46262277 attagaggagaggacattaggaatatattgggtatgcccaacttcagattcaacaccttttgaaaaggttttg 46262205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 21657 - 21565
Alignment:
Q  10 ggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| || |||||||||||  |||||||    
T  21657 ggagagtacattaggaataggttgggaatgcccaactttagatttaccaccttctgaaaaggttttggtctaatcccccttttccatcttgta 21565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 23467 - 23375
Alignment:
Q  10 ggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    |||||||||| |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| || ||||| |||||||| |||||    
T  23467 ggagagtacattaggaataggttgggaatacccaactttagatttaccaccttttgaaaaggttttggtctaatcccctttttcttttttgta 23375  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 10012870 - 10012968
Alignment:
Q  4 attagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||| |||||||||| ||||||||||||||| |||||||| || || ||||||| |||||||||||||||||||   |||||||||||||||||||||    
T  10012870 attaggggagagtacattaggaataggttgggtatgcccaatttcaggtttaacaccttttgaaaaggttttggttcggtcccccttttctttcttgta 10012968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 37247096 - 37247191
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttcttt 96  Q
    |||||||| ||||| |||||||||||| |||||| |||| |||| || | ||| |||||||||||||||||||||||||||||| |||||||||||    
T  37247096 ttcattaggggagaatacactaggaattggttggaaatgtccaatttcatattcaacatcttttgaaaaggttttggtatagtctcccttttcttt 37247191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 19921174 - 19921273
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||||||| |||||| |||||||| ||| ||||||||||||||   | ||||||||||||||||| | | ||||||||||||||| |||||    
T  19921174 cattagaggagagtacaataggaacaggttgggtatgtccaactttagattttctaccttttgaaaaggttttgatttggtcccccttttcttttttgta 19921273  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 580553 - 580634
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttct 94  Q
    ||||||| ||||||||||||||| |||||||||||||| | |  || ||||||||||||||||||| | |||||||||||||    
T  580553 gagtacaataggaataggttgggtatgcccaactttaggtatgtcaccttttgaaaaggttttggtttggtcccccttttct 580634  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 45088712 - 45088812
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttg 100  Q
    |||||||  |||||||||| | | ||||||||||| |||||  | ||| ||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  45088712 ttcattacgggagagtacatttgaaataggttgggtatgcctgattttcgatttaacatcttttgaaaaggttttggtatag-ccccctttgctatcttg 45088810  T
Q  101 ta 102  Q
    ||    
T  45088811 ta 45088812  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 36585699 - 36585781
Alignment:
Q  20 ctaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||| || ||||||| || || || ||| ||| |||||||||||||||||||| |||||||||||||||| |||||    
T  36585699 ctaggaataggatgagaatgcctaatttcaggttttacaccttttgaaaaggttttggtacagtcccccttttctttattgta 36585781  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 28603681 - 28603773
Alignment:
Q  10 ggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    |||||||||| ||||||||||||||||||| |||| |||| ||||| |   |||||| ||||||| ||| || ||| || |||||||||||||    
T  28603681 ggagagtacattaggaataggttgggaatgtccaattttaaatttatctcattttgagaaggtttaggtttaatcctccctttctttcttgta 28603773  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 20534828 - 20534866
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttaga 51  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  20534828 gagtacattaggaacaggttgggaatgcccaactttaga 20534866  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 13043293 - 13043354
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttt 74  Q
    ||||||| |||||||||||||||| | ||||||||||||| |   | |||||||||||||||    
T  13043293 gagtacaataggaataggttgggattacccaactttagatatgtaaccttttgaaaaggttt 13043354  T

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Target: scaffold0126 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 43984 - 44082
Alignment:
Q  4 attagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||| |||||||||| ||||||||||||||| |||||||| || || ||||||| |||||||||||||||||||   | |||||||||||||||||||    
T  43984 attaggggagagtacattaggaataggttgggtatgcccaatttcaggtttaacaccttttgaaaaggttttggttcggccccccttttctttcttgta 44082  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 7705815 - 7705914
Alignment:
Q  3 cattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||||||| || ||| |||||||  ||||||||||||| |||||  || |||| |||||||||||||||||||||| |||||||| |||||    
T  7705815 cattagaggagagtacaataagaacaggttggatatgcccaactttaaatttactatattttaaaaaggttttggtatagtccccattttcttttttgta 7705914  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 34493476 - 34493438
Alignment:
Q  64 tgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  34493476 tgaaaaggttttggtatagtcctccttttctttcttgta 34493438  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 26268339 - 26268395
Alignment:
Q  35 gaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtccccctttt 92  Q
    |||||||||| ||||||||    ||||||||||||||||||||||||| |||||||||    
T  26268339 gaatgcccaattttagattctctatcttttgaaaaggttttggtatag-ccccctttt 26268395  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 17238735 - 17238679
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaa 69  Q
    ||||||| |||||||| || ||| |||||||||||||||||||  | ||||||||||    
T  17238735 gagtacattaggaataagtcgggtatgcccaactttagatttattaccttttgaaaa 17238679  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 34493420 - 34493388
Alignment:
Q  112 atctaatgaaatggtgcatctgcatctgtttat 144  Q
    ||||||||||||| |||||||||||||||||||    
T  34493420 atctaatgaaatgatgcatctgcatctgtttat 34493388  T

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Target: scaffold0051 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 62832 - 62924
Alignment:
Q  10 ggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    |||||||||| ||| |||||||||||||  ||||||||||||||||  | ||| ||||||||| ||||| || ||||||||||||||||||||    
T  62832 ggagagtacattagaaataggttgggaaaacccaactttagatttactaccttatgaaaaggtcttggtttattcccccttttctttcttgta 62924  T

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Target: scaffold0664 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 2170 - 2244
Alignment:
Q  4 attagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggt 78  Q
    ||||| |||||||||| ||||||||||||||| |||||||| || || ||||||| |||||||||||||||||||    
T  2170 attaggggagagtacattaggaataggttgggtatgcccaatttcaggtttaacaccttttgaaaaggttttggt 2244  T

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Target: scaffold0490 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 10215 - 10304
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttgg-tatagtcccccttttctttcttgta 102  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||  || |||||||||||||||||| || | ||||||||||||||||||||    
T  10215 gagtacaataggaataggttgggtatgcccaacttcagatttgtcaccttttgaaaaggttttggctaga-tcccccttttctttcttgta 10304  T

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Target: scaffold1544 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1544
Description:

Target: scaffold1544; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 1240 - 1333
Alignment:
Q  1 ttcattagaggagagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttct 94  Q
    |||||||||||||||||||||| ||||||||||||  ||||||| || || |||   | ||||||||||||||||||| | |||||||||||||    
T  1240 ttcattagaggagagtacactaagaataggttgggcttgcccaatttcaggttttgtaccttttgaaaaggttttggttttgtcccccttttct 1333  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 23616913 - 23616832
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttct 94  Q
    ||||||| ||||||||||||||| ||||||||||| || | |  || ||||||||||||||||||| | |||||||||||||    
T  23616913 gagtacaataggaataggttgggtatgcccaacttcaggtatgtcaccttttgaaaaggttttggtttggtcccccttttct 23616832  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 23848312 - 23848231
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttct 94  Q
    ||||||| ||||||||||||||| ||||||||||| || | |  || ||||||||||||||||||| | |||||||||||||    
T  23848312 gagtacaataggaataggttgggtatgcccaacttcaggtatgtcaccttttgaaaaggttttggtttggtcccccttttct 23848231  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 4151842 - 4151919
Alignment:
Q  25 aataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||  ||| |||| || || ||||||| || |||||||||||||||| | |||||||||||||||||||||    
T  4151842 aataggttggatatgtccaatttcaggtttaacacctattgaaaaggttttggtttggtcccccttttctttcttgta 4151919  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 38622938 - 38623026
Alignment:
Q  13 gagtacactaggaataggttgggaatgcccaactttagatttaacatcttttgaaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||| ||||||||| ||||||||| |||||||||||| |   | |||||||||||| |||||| | | ||||||||||||| |||||    
T  38622938 gagtacaataggaatagattgggaatgtccaactttagatatgtaaccttttgaaaagg-tttggtttggccccccttttcttttttgta 38623026  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 23138489 - 23138453
Alignment:
Q  66 aaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||  |||||||||||||||||||||||    
T  23138489 aaaaggttttggcctagtcccccttttctttcttgta 23138453  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 26229333 - 26229297
Alignment:
Q  66 aaaaggttttggtatagtcccccttttctttcttgta 102  Q
    ||||||||||||  |||||||||||||||||||||||    
T  26229333 aaaaggttttggcctagtcccccttttctttcttgta 26229297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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