View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_low_52 (Length: 271)

Name: NF15299_low_52
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_low_52
NF15299_low_52
[»] chr4 (1 HSPs)
chr4 (17-271)||(9047635-9047889)
[»] chr2 (2 HSPs)
chr2 (191-271)||(22564540-22564620)
chr2 (162-241)||(24185749-24185828)
[»] chr5 (1 HSPs)
chr5 (200-266)||(38622720-38622786)
[»] scaffold0126 (2 HSPs)
scaffold0126 (162-243)||(38762-38843)
scaffold0126 (162-241)||(43737-43816)
[»] chr3 (1 HSPs)
chr3 (162-243)||(14960141-14960222)
[»] chr7 (2 HSPs)
chr7 (162-241)||(10012623-10012702)
chr7 (187-266)||(13043062-13043141)
[»] chr1 (1 HSPs)
chr1 (162-243)||(19280833-19280914)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 9047889 - 9047635
Alignment:
Q  17 agaacccttgcaaagtttctgcaggaggtaattttcgtaattctgagagtatatgtatgtgatgcttttttcagttcttaggtcctcaaaatgctctcta 116  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9047889 agaacccttgcaaagcttctgcaggaggtatttttcgtaattctgagagtatatgtatgggatgcttttttcagttcttaggtcctcaaaatgctctcta 9047790  T
Q  117 tgctgaattggtagatgctatgattgcaattgagattgcatacaacaaaggttttctgaatctctggcttgaatcagactcctaactggttattatggct 216  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  9047789 tgctgagttggtagctgctatgattacaattgagattgcatacaacaaaggttttctgaatctctggcttgaatcaaactcccaactggttattctggct 9047690  T
Q  217 ttcaaatcaaacactgtggttccttggggattacgaaatagatggaaaaactgca 271  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||    
T  9047689 ttcaaatcaaacactgtggttccttggggattaagaaatagatggcaaaattgca 9047635  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 22564540 - 22564620
Alignment:
Q  191 cagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatggaaaaactgca 271  Q
    |||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||    
T  22564540 cagactcccaactggttattctggctttcaaatcaaacattgtggttccttggggattaagaaatagatggcaaaactgca 22564620  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 24185828 - 24185749
Alignment:
Q  162 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttcctt 241  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||||| |||||||||| |||||  | ||||||||||    
T  24185828 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttcctt 24185749  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 38622720 - 38622786
Alignment:
Q  200 aactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatggaaaaa 266  Q
    ||||||| |||||||||||||| ||||   |||||||||||||||||||| ||||||| ||| ||||    
T  38622720 aactggtgattatggctttcaattcaatttctgtggttccttggggattaagaaataggtgggaaaa 38622786  T

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Target: scaffold0126 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 38762 - 38843
Alignment:
Q  162 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttgg 243  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||||| |||||||||| |||||  | ||||||||||||    
T  38762 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttgg 38843  T

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Target: scaffold0126; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 43737 - 43816
Alignment:
Q  162 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttcctt 241  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||||| |||||||||| |||||  | ||||||||||    
T  43737 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttcctt 43816  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 14960141 - 14960222
Alignment:
Q  162 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttgg 243  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||||| |||||||||| |||||  | ||||||||||||    
T  14960141 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttccttgg 14960222  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 10012623 - 10012702
Alignment:
Q  162 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttcctt 241  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||||| |||||||||| |||||  | ||||||||||    
T  10012623 caaaggttttcaaaatgtatggcttgaatcagactcccaattagttattttggctttcaagtcaaagtcagtggttcctt 10012702  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 13043062 - 13043141
Alignment:
Q  187 gaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttggggattacgaaatagatggaaaaa 266  Q
    |||||||||||  ||||||| |||||||||||||| || |   |||||||||||||||| ||| ||||||| ||| ||||    
T  13043062 gaatcagactctcaactggtgattatggctttcaattcgatttctgtggttccttggggtttaagaaataggtgggaaaa 13043141  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 19280914 - 19280833
Alignment:
Q  162 caaaggttttctgaatctctggcttgaatcagactcctaactggttattatggctttcaaatcaaacactgtggttccttgg 243  Q
    |||||||||||  ||| | |||||||||||||||||| || | |||| | |||||||||| |||||  | ||||||||||||    
T  19280914 caaaggttttcaaaatgtttggcttgaatcagactcccaattagttaatttggctttcaagtcaaattcagtggttccttgg 19280833  T

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