View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_56 (Length: 252)
Name: NF15299_low_56
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 13563903 - 13563682
Alignment:
| Q |
13 |
agcagagatgaattttgccatagcttatattatatcaatcagattttcttttattttgtgtgattgcatggaatgaattggcacaacattgttccaattt |
112 |
Q |
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| T |
13563903 |
agcagagatgaattttgccatagcttatattatatcaatgagattttcttttattttgtgtgattgcatggaatgaattggcacaacattgttccaattt |
13563804 |
T |
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| Q |
113 |
atggaacttctgttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtgggaacaatg |
212 |
Q |
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| T |
13563803 |
atggaactactgttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtgggaacaatg |
13563704 |
T |
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| Q |
213 |
gtattaaaattttgccacagct |
234 |
Q |
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||||||||||||||||| |||| |
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| T |
13563703 |
gtattaaaattttgccatagct |
13563682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 14203293 - 14203090
Alignment:
| Q |
13 |
agcagagatgaattttgccatagcttatattatatcaatcagattttctttta--ttttgtgtgattgcatggaatgaattgg-cacaacattgttccaa |
109 |
Q |
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| T |
14203293 |
agcagagatgaattttgccatagcttatattatatcaatgagattttcttttattttttttgtgattgcatggaatgaattggttacaaaattgttccaa |
14203194 |
T |
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| Q |
110 |
tttatggaacttctgttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtgggaaca |
209 |
Q |
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| T |
14203193 |
tttatagaac------------taaatgtgaagtgaattaattaaagttgggtttacgtgaggaatattatttttacaaaattgaaactatgtgggagcc |
14203106 |
T |
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| Q |
210 |
atggtattaaaatttt |
225 |
Q |
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| T |
14203105 |
atgctattaaattttt |
14203090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 13574744 - 13574601
Alignment:
| Q |
13 |
agcagagatgaattttgccatagcttatattatatcaatcagattttcttttattttgtgtgattgcatggaatgaattgg-cacaacattgttccaatt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||| |
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| T |
13574744 |
agcagagatgaattttgccatagcttatattatatcaatgagattttcttttattttttgtgattgcatggaatgaattggttacaaaattgttctaatt |
13574645 |
T |
|
| Q |
112 |
tatggaacttctgttttccttaaatgtgaagtgaatggattaaa |
155 |
Q |
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| T |
13574644 |
tatggaactaatgtttaccttaaatgtgaagtgaatggattaaa |
13574601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 13571179 - 13571040
Alignment:
| Q |
15 |
cagagatgaattttgccatagcttatattatatcaatcagattttcttttattttgtgtgattgcatggaatgaatt-ggcacaacattgttccaattta |
113 |
Q |
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|||||||| ||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||| | |||| |||||||||||||| |
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| T |
13571179 |
cagagatgtattttgccatagcttatat-----caatgagattttgttttactttgtgtgattgcatggaatgaattagttacaaaattgttccaattta |
13571085 |
T |
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| Q |
114 |
tggaacttctgttttcct---taaatgtgaagtgaatggattaaa |
155 |
Q |
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| T |
13571084 |
tagaactaatgaataccttaataaatgtgaagtgaatggattaaa |
13571040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 7421952 - 7421885
Alignment:
| Q |
140 |
aagtgaatggattaaa-gttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtggga |
206 |
Q |
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| T |
7421952 |
aagtgaatgaattaaaagttgcgtttgcgtgaggaataatatttttacaaaattgaaactatgtggga |
7421885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 3917544 - 3917647
Alignment:
| Q |
123 |
tgttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaat-----attatttttacaaaattgaa-actatgtgggaacaatggtat |
216 |
Q |
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|||||||||||||||| ||||||||| |||||| | |||||||||||||||| |||||||||||||| ||||| ||||||||||||| || |||| |
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| T |
3917544 |
tgttttccttaaatgttaagtgaatgaattaaattcaggtttgcgtgaggaatactacattatttttacaaagttgaagactatgtgggaaccatagtat |
3917643 |
T |
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| Q |
217 |
taaa |
220 |
Q |
| |
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|||| |
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| T |
3917644 |
taaa |
3917647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 4220001 - 4219921
Alignment:
| Q |
125 |
ttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtgggaa |
207 |
Q |
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||||||||||||| ||||||||| |||||| ||| ||||||||||||| |||||||| | |||||||||| ||||| |||| |
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| T |
4220001 |
ttttccttaaatg--aagtgaatgaattaaatttgattttgcgtgaggaaaattattttcaaaaaattgaaaatatgttggaa |
4219921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 3929928 - 3929964
Alignment:
| Q |
159 |
gggtttgcgtgaggaatattatttttacaaaattgaa |
195 |
Q |
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| T |
3929928 |
gggtttgagtgaggtatattatttttacaaaattgaa |
3929964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 5388922 - 5388858
Alignment:
| Q |
107 |
caatttatggaacttctgttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgag |
171 |
Q |
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|||||||| ||||| || |||||||||||| |||||||||| |||||| |||| |||||||||| |
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| T |
5388922 |
caatttatcgaactaatgatttccttaaatgagaagtgaatgaattaaatttggttttgcgtgag |
5388858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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