View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_low_57 (Length: 252)

Name: NF15299_low_57
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_low_57
NF15299_low_57
[»] chr4 (4 HSPs)
chr4 (1-91)||(53913480-53913569)
chr4 (7-50)||(31041125-31041168)
chr4 (9-64)||(43385312-43385367)
chr4 (9-50)||(2326280-2326321)
[»] chr7 (2 HSPs)
chr7 (135-236)||(13015353-13015454)
chr7 (171-236)||(15632915-15632980)
[»] chr3 (1 HSPs)
chr3 (92-236)||(16739820-16739964)
[»] chr5 (1 HSPs)
chr5 (182-236)||(2158167-2158221)
[»] chr1 (1 HSPs)
chr1 (177-236)||(41116880-41116939)
[»] chr8 (1 HSPs)
chr8 (9-62)||(36779465-36779518)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 53913480 - 53913569
Alignment:
Q  1 tgtgtagagagaattaattttgatataatttattatgtataattaattttgattaaatgtgattgtgactaaaaggggtttgtatttgcat 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  53913480 tgtgtagagagaattaattttgatataatttattatgtataattaattttgattaaatgtgattgtgactaaaa-gggtttgtatttgcat 53913569  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 31041168 - 31041125
Alignment:
Q  7 gagagaattaattttgatataatttattatgtataattaatttt 50  Q
    ||||||||| ||||||||| |||||||||| |||||||||||||    
T  31041168 gagagaatttattttgatagaatttattatttataattaatttt 31041125  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 43385312 - 43385367
Alignment:
Q  9 gagaattaattttgatataatttattatgtataattaattttgattaaatgtgatt 64  Q
    ||||||||||||||||| |||| ||||| || |||| |||||||||||| ||||||    
T  43385312 gagaattaattttgataaaattgattatatagaattgattttgattaaaagtgatt 43385367  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 2326280 - 2326321
Alignment:
Q  9 gagaattaattttgatataatttattatgtataattaatttt 50  Q
    |||||||||||||||||||||| |||||||| |||| |||||    
T  2326280 gagaattaattttgatataattgattatgtaaaattgatttt 2326321  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 13015454 - 13015353
Alignment:
Q  135 attacacactcttggcaaccaccttccctgggccggtataagtgcaccattgatgttgcgttctcttcttccctcaaccgtactggtattggtatctgtg 234  Q
    |||||||| ||||||||||| |||   | ||| || ||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  13015454 attacacattcttggcaacctcctcttccgggtcgatataaatgcaacattgatgttgcgttctcttcctccctcaaccgcactggtattggtatttgtg 13015355  T
Q  235 tc 236  Q
    ||    
T  13015354 tc 13015353  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 15632915 - 15632980
Alignment:
Q  171 tataagtgcaccattgatgttgcgttctcttcttccctcaaccgtactggtattggtatctgtgtc 236  Q
    ||||| |||| |||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||    
T  15632915 tataaatgcaacattgatgctgcgttctcttcctccctcaaccacactggtattggtatttgtgtc 15632980  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 16739964 - 16739820
Alignment:
Q  92 gccattacccattgcggggggagtgtccacctcgaggcctcctattacacactcttggcaaccaccttccctgggccggtataagtgcaccattgatgtt 191  Q
    |||| ||||| ||| |||||||  |||||| ||| |||| |  |||||||| ||||||| ||| |||   | ||| || ||||| |||| ||||||||||    
T  16739964 gccaataccctttgaggggggaccgtccacttcggggccccaaattacacattcttggcgacctcctcttccgggtcgatataaatgcaacattgatgtt 16739865  T
Q  192 gcgttctcttcttccctcaaccgtactggtattggtatctgtgtc 236  Q
    ||||||||||| ||||||||||  |||||||||| ||| ||||||    
T  16739864 gcgttctcttcctccctcaaccacactggtattgatatttgtgtc 16739820  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 2158221 - 2158167
Alignment:
Q  182 cattgatgttgcgttctcttcttccctcaaccgtactggtattggtatctgtgtc 236  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||    
T  2158221 cattgatgttgtgttctcttcctccctcaaccgcactggtattggtatttgtgtc 2158167  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 41116880 - 41116939
Alignment:
Q  177 tgcaccattgatgttgcgttctcttcttccctcaaccgtactggtattggtatctgtgtc 236  Q
    |||| ||||||||  ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  41116880 tgcaacattgatgccgcgttctcttcctccctcaaccgcactggtattggtatttgtgtc 41116939  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 36779518 - 36779465
Alignment:
Q  9 gagaattaattttgatataatttattatgtataattaattttgattaaatgtga 62  Q
    ||||||| |||||||||||||| ||| |||| |||| |||||||||||| ||||    
T  36779518 gagaattgattttgatataattgattttgtagaattgattttgattaaaagtga 36779465  T

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