View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_low_6 (Length: 590)

Name: NF15299_low_6
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_low_6
NF15299_low_6
[»] chr3 (28 HSPs)
chr3 (14-577)||(49827332-49827893)
chr3 (108-333)||(54764321-54764558)
chr3 (116-197)||(54763882-54763963)
chr3 (108-196)||(54765682-54765770)
chr3 (385-484)||(54765324-54765423)
chr3 (395-464)||(21634365-21634434)
chr3 (205-309)||(54765557-54765661)
chr3 (392-464)||(54764092-54764164)
chr3 (393-464)||(1317508-1317579)
chr3 (399-484)||(36523093-36523178)
chr3 (207-308)||(54763759-54763859)
chr3 (271-309)||(54764962-54765000)
chr3 (138-196)||(54765081-54765139)
chr3 (395-464)||(4358426-4358495)
chr3 (395-464)||(21633502-21633571)
chr3 (395-464)||(26059670-26059739)
chr3 (395-464)||(26060543-26060612)
chr3 (205-305)||(54763514-54763615)
chr3 (81-153)||(54763683-54763755)
chr3 (55-150)||(1318146-1318240)
chr3 (243-303)||(4357440-4357501)
chr3 (395-464)||(4357553-4357622)
chr3 (243-303)||(21633389-21633450)
chr3 (243-303)||(26060664-26060725)
chr3 (251-311)||(54765195-54765256)
chr3 (423-484)||(54765849-54765910)
chr3 (392-456)||(54763883-54763947)
chr3 (392-456)||(54764470-54764534)
[»] chr1 (23 HSPs)
chr1 (391-577)||(30219270-30219455)
chr1 (208-338)||(30219540-30219670)
chr1 (205-340)||(20201175-20201311)
chr1 (251-352)||(30219124-30219226)
chr1 (107-185)||(20201343-20201421)
chr1 (270-312)||(20201993-20202035)
chr1 (395-464)||(4291969-4292038)
chr1 (395-464)||(33209244-33209313)
chr1 (395-464)||(37398690-37398759)
chr1 (395-464)||(41778435-41778504)
chr1 (395-464)||(50988303-50988372)
chr1 (399-454)||(34041396-34041451)
chr1 (395-437)||(7715791-7715833)
chr1 (395-457)||(10704887-10704949)
chr1 (56-153)||(22521171-22521268)
chr1 (395-464)||(37397817-37397886)
chr1 (243-303)||(37398139-37398200)
chr1 (243-303)||(41777460-41777521)
chr1 (395-464)||(50987865-50987934)
chr1 (243-303)||(50988190-50988251)
chr1 (271-311)||(20200844-20200884)
chr1 (81-169)||(20202256-20202343)
chr1 (59-123)||(30219122-30219186)
[»] chr5 (14 HSPs)
chr5 (101-330)||(27433163-27433404)
chr5 (393-471)||(27433294-27433372)
chr5 (205-326)||(27433929-27434050)
chr5 (395-464)||(34996866-34996935)
chr5 (254-312)||(43250585-43250644)
chr5 (395-437)||(34997766-34997808)
chr5 (395-464)||(20400299-20400368)
chr5 (395-456)||(27433826-27433887)
chr5 (56-197)||(27433825-27433968)
chr5 (521-577)||(27434048-27434104)
chr5 (395-437)||(17843103-17843145)
chr5 (243-303)||(20400420-20400481)
chr5 (271-311)||(13549603-13549643)
chr5 (56-128)||(43250538-43250610)
[»] scaffold0206 (5 HSPs)
scaffold0206 (81-177)||(10733-10829)
scaffold0206 (205-333)||(10626-10754)
scaffold0206 (254-309)||(11338-11394)
scaffold0206 (392-484)||(10540-10632)
scaffold0206 (113-197)||(10521-10605)
[»] chr4 (16 HSPs)
chr4 (204-330)||(54960867-54960993)
chr4 (72-154)||(54960812-54960894)
chr4 (395-464)||(37087205-37087274)
chr4 (396-464)||(54961006-54961073)
chr4 (237-320)||(54961121-54961205)
chr4 (270-312)||(54961932-54961974)
chr4 (205-294)||(54962247-54962337)
chr4 (395-464)||(18122322-18122391)
chr4 (395-464)||(36031993-36032062)
chr4 (395-464)||(37086332-37086401)
chr4 (107-196)||(54961014-54961102)
chr4 (395-458)||(36032865-36032928)
chr4 (270-312)||(37086008-37086050)
chr4 (243-303)||(36032114-36032175)
chr4 (243-303)||(36032986-36033047)
chr4 (272-309)||(54962674-54962711)
[»] chr6 (18 HSPs)
chr6 (205-351)||(30696191-30696338)
chr6 (81-177)||(30696054-30696151)
chr6 (205-326)||(30695946-30696068)
chr6 (270-334)||(5324213-5324277)
chr6 (395-484)||(5323053-5323142)
chr6 (241-303)||(18754547-18754610)
chr6 (270-351)||(30693292-30693373)
chr6 (139-183)||(5323094-5323138)
chr6 (392-484)||(5323845-5323937)
chr6 (224-326)||(5323975-5324078)
chr6 (208-330)||(5324566-5324689)
chr6 (56-151)||(30693309-30693404)
chr6 (270-312)||(5323200-5323242)
chr6 (395-437)||(5324139-5324181)
chr6 (115-185)||(5324727-5324797)
chr6 (419-457)||(26417023-26417061)
chr6 (271-312)||(18753913-18753954)
chr6 (271-311)||(30695768-30695808)
[»] chr2 (8 HSPs)
chr2 (108-309)||(1077323-1077537)
chr2 (108-309)||(1077907-1078119)
chr2 (102-197)||(1076832-1076927)
chr2 (241-297)||(1076472-1076529)
chr2 (81-153)||(1076633-1076705)
chr2 (392-456)||(1076833-1076897)
chr2 (392-484)||(1078198-1078290)
chr2 (116-196)||(1078226-1078306)
[»] scaffold0517 (1 HSPs)
scaffold0517 (395-464)||(9327-9396)
[»] chr7 (3 HSPs)
chr7 (395-464)||(46364434-46364503)
chr7 (395-464)||(46365308-46365377)
chr7 (269-313)||(8548290-8548334)
[»] chr8 (8 HSPs)
chr8 (408-484)||(13643302-13643377)
chr8 (408-484)||(13743727-13743802)
chr8 (534-577)||(13643306-13643349)
chr8 (534-577)||(13743731-13743774)
chr8 (245-333)||(13643702-13643791)
chr8 (245-333)||(13744127-13744216)
chr8 (210-312)||(13643200-13643304)
chr8 (210-312)||(13743625-13743729)


Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 14 - 577
Target Start/End: Complemental strand, 49827893 - 49827332
Alignment:
Q  14 cattttagtccatgagggttcaatattattatgtgtccactaaattgaagtgatatgttattttaagtagtataaacgttttatcgtgaacaatttttta 113  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  49827893 cattttaatccatgagggttcaatattattgtgtgtccaataaattgaagggatgtgttattttaagtagtataaacgttttatcgtgaacaatttttta 49827794  T
Q  114 taaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaatttttaatcttgtgcatttta 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  49827793 taaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttacttctgaaatttt-aatcttgtgcatttta 49827695  T
Q  214 gttatttacgatattttagatattgctcatttatcttgtgcattttagttgattaagttcaatatcattgtagaattgaagtgaagtgatattctaaatg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49827694 gttatttacgatattttagatattgctcatttatcttgtgcattttagttaattaagttcaatatcattgtagaattgaagtgaagtgatattctaaatg 49827595  T
Q  314 atataaaagttttatcaggatcaatttattaaaaatgacttaagaacattattctcatgtttatattaaagttgtttggtgtatcaaagttagtttagtt 413  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49827594 atataaaagttttatcaggatcaatttattgaaaatgacttaagaacattattctcatgtttatattaaagttgtttggtgtatcaaagttagtttagtt 49827495  T
Q  414 agtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgttagcttctcccatgcatttcaaagttatctacaannnnnnnngtcaat 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        ||||||    
T  49827494 agtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgtcagcttctcccatgcatttcaaagttatctacaa-tttttttgtcaat 49827396  T
Q  514 gctcacttatcatgtgcatatgagttatttctaaaattttagtcaatgcccacttctcctatgc 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49827395 gctcacttatcatgtgcatatgagttatttctaaaattttagtcaatgcccacttctcctatgc 49827332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 108 - 333
Target Start/End: Complemental strand, 54764558 - 54764321
Alignment:
Q  108 tttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaattt--ttaatct--- 202  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||| ||| ||||||| |||||||||| |||||||  ||||||||  | ||| |       
T  54764558 tttttataaataacaacttctcccgtgtatcaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttgaaattttgtcaatgtctg 54764459  T
Q  203 -------tgtgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaag 294  Q
           ||||||||||| ||| ||||||||||||| | | | | || |||  | ||| |||||||||||| | |||||||||||||| |||||||||||    
T  54764458 cttcttctgtgcattttatttaattacgatattttatacaat-cacacttacatcgtgtattttagttgatgacagttcaatatcattatagaattgaag 54764360  T
Q  295 tgaagtgatattctaaatgatataaaagttttatcagga 333  Q
     |||||||||||||| ||  ||||||  |||||||||||    
T  54764359 cgaagtgatattctagatagtataaacattttatcagga 54764321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 54763963 - 54763882
Alignment:
Q  116 aataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaattttt 197  Q
    ||||||||||| |  ||||||| |||||||||||||||| ||| ||||||| |||||||||| |||||||  ||||||||||    
T  54763963 aataacaacttctcgcgtgtatcaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttgaaattttt 54763882  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 54765770 - 54765682
Alignment:
Q  108 tttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaatttt 196  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||| ||| | | ||| |||||||||||||| |||  |||||||||    
T  54765770 tttttataaataacaacttctcccgtgtatcaaagttaatttagtcagtgacagcatataccgtgcatttaagtgacttttgaaatttt 54765682  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 484
Target Start/End: Complemental strand, 54765423 - 54765324
Alignment:
Q  385 ttgtttggtgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgttagcttctcccatgcattt 484  Q
    |||||| ||||||||||| || |||||| |||| |||||||||| || ||||| ||||| || | ||||||||| |||||| |  |||||||||||||||    
T  54765423 ttgtttcgtgtatcaaagctaatttagtcagtgtcaacttatctagtacatttgagttagttatgaaattttagtcaatgtcattttctcccatgcattt 54765324  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 21634434 - 21634365
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||||| |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  21634434 tatcaaagttagtttagttagtgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 21634365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 309
Target Start/End: Complemental strand, 54765661 - 54765557
Alignment:
Q  205 tgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaagtgaagtgat 303  Q
    ||||||||| ||| ||||||||||||| | | | | || ||||||  || |||||||||||| | |||||||||||||||||||||||||  ||||||||    
T  54765661 tgcattttatttaattacgatattttatacaat-cgcacttatctcatgtattttagttgatgacagttcaatatcattgtagaattgaaacgaagtgat 54765563  T
Q  304 attcta 309  Q
    ||||||    
T  54765562 attcta 54765557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 464
Target Start/End: Complemental strand, 54764164 - 54764092
Alignment:
Q  392 gtgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    |||||||||||||| ||||||||||| |||||||||| || ||||| ||||| || | ||||||||| |||||    
T  54764164 gtgtatcaaagttaatttagttagtgtcaacttatcttgtacatttgagttaattatgaaattttagtcaatg 54764092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 464
Target Start/End: Complemental strand, 1317579 - 1317508
Alignment:
Q  393 tgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    |||||||||||||||||||| |||| |||||||||   | ||||| ||||| |||||||||||||| |||||    
T  1317579 tgtatcaaagttagtttagtcagtgtcaacttatcatttacatttgagttaattctaaaattttagacaatg 1317508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 484
Target Start/End: Original strand, 36523093 - 36523178
Alignment:
Q  399 aaagttagtttagttagtggcaacttatctcgtgcatttcagtt-atttctaaaattttagccaatgttagcttctcccatgcattt 484  Q
    |||||||||||||| |||| ||||||||| ||| | ||| |||| |||||||||||||||| |||| | | ||||||||||||||||    
T  36523093 aaagttagtttagtcagtgacaacttatcccgtacgtttgagttaatttctaaaattttagtcaatctca-cttctcccatgcattt 36523178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 308
Target Start/End: Complemental strand, 54763859 - 54763759
Alignment:
Q  207 cattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaagtgaagtgatat 305  Q
    ||||||| ||||||||||||||||| | | | |||| | |||| |||||||||||||||| | ||||| ||||||||||| |||| ||| ||||||||||    
T  54763859 cattttatttatttacgatattttatacaat-ctcact-atctcgtgcattttagttgatgacagttctatatcattgtaaaatttaagcgaagtgatat 54763762  T
Q  306 tct 308  Q
    |||    
T  54763761 tct 54763759  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 54765000 - 54764962
Alignment:
Q  271 ttcaatatcattgtagaattgaagtgaagtgatattcta 309  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  54765000 ttcaatatcattgtagaattgaagcgaagtgatattcta 54764962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 54765139 - 54765081
Alignment:
Q  138 aaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaatttt 196  Q
    ||||||||||||||||| ||| ||||||| |||||||||| |||||||  |||||||||    
T  54765139 aaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttgaaatttt 54765081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 4358495 - 4358426
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  4358495 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 4358426  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 21633571 - 21633502
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  21633571 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 21633502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 26059670 - 26059739
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  26059670 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 26059739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 26060543 - 26060612
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  26060543 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaattttagtcaatg 26060612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 54763615 - 54763514
Alignment:
Q  205 tgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgattaag-ttcaatatcattgtagaattgaagtgaagtgat 303  Q
    |||||||||  |||||||||  ||||||| | ||  || |||||| |||||||||||||||| | | |||||||| ||||||||||| |||||| |||||    
T  54763615 tgcattttatatatttacgaatttttagacaatgtccacttatctcgtgcattttagttgatgagggttcaatataattgtagaattaaagtgacgtgat 54763516  T
Q  304 at 305  Q
    ||    
T  54763515 at 54763514  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 54763755 - 54763683
Alignment:
Q  81 tagtataaacgttttatcgtgaacaattttttataaataacaacttgtgtcgtgtataaaagttaatttagtc 153  Q
    |||||||||  ||||||| ||||||| ||||||||||| |||||||||  |  |||| |||||||||||||||    
T  54763755 tagtataaatattttatcatgaacaaatttttataaatgacaacttgttccaggtatcaaagttaatttagtc 54763683  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 1318240 - 1318146
Alignment:
Q  55 aaattgaagtgatatgttattttaagtagtataaacgttttatcgtgaacaattttttataaataacaacttgtgtcgtgtataaaagttaattta 150  Q
    ||||||||||||  || |||| ||| ||||||||||| |||||| ||||| | ||||||||||| |||||||||  ||||||| ||| ||| ||||    
T  1318240 aaattgaagtgaggtgatattctaaatagtataaacgctttatcatgaac-agtttttataaatgacaacttgtcacgtgtatcaaatttagttta 1318146  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 4357501 - 4357440
Alignment:
Q  243 tttatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgat 303  Q
    |||||| ||||||||||||||||| |  |||||||||| ||||||||||||| ||| |||||    
T  4357501 tttatcctgtgcattttagttgataagtgttcaatatcgttgtagaattgaattgaggtgat 4357440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 4357622 - 4357553
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||| ||||||||  |||| || | ||||||||| |||||    
T  4357622 tatcaaagttagtttagttagcgacaacttctcttgtgcatttatgttacttttgaaattttagtcaatg 4357553  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 21633450 - 21633389
Alignment:
Q  243 tttatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgat 303  Q
    |||||| ||||||||||||||||| |  |||||||||| ||||||||||||| ||| |||||    
T  21633450 tttatcctgtgcattttagttgataagtgttcaatatcgttgtagaattgaattgaggtgat 21633389  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 26060664 - 26060725
Alignment:
Q  243 tttatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgat 303  Q
    |||||| ||||||||||||||||| |  |||||||||| ||||||||||||| ||| |||||    
T  26060664 tttatcctgtgcattttagttgataagtgttcaatatcgttgtagaattgaattgaggtgat 26060725  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 54765256 - 54765195
Alignment:
Q  251 gtgcattttagttgattaag-ttcaatatcattgtagaattgaagtgaagtgatattctaaa 311  Q
    |||||||||||||||| | | |||||||| ||||||||||| |||| || ||||||||||||    
T  54765256 gtgcattttagttgatgagggttcaatataattgtagaattaaagttaactgatattctaaa 54765195  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 484
Target Start/End: Complemental strand, 54765910 - 54765849
Alignment:
Q  423 ttatctcgtgcatttcagttatttctaaaattttagccaatgttagcttctcccatgcattt 484  Q
    ||||| ||||||||| ||||| |||| ||||||||  ||||| | |||||||||||||||||    
T  54765910 ttatcccgtgcatttgagttacttctgaaattttactcaatgctcgcttctcccatgcattt 54765849  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 54763947 - 54763883
Alignment:
Q  392 gtgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaatttt 456  Q
    |||||||||||||| |||||| |||| ||||||||  ||||||||| ||||| || | |||||||    
T  54763947 gtgtatcaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttgaaatttt 54763883  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 54764534 - 54764470
Alignment:
Q  392 gtgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaatttt 456  Q
    |||||||||||||| |||||| |||| ||||||||  ||||||||| ||||| || | |||||||    
T  54764534 gtgtatcaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttgaaatttt 54764470  T

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Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 391 - 577
Target Start/End: Complemental strand, 30219455 - 30219270
Alignment:
Q  391 ggtgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgttagcttctcccatgcatttcaaagt 490  Q
    ||||||||||||||| ||| ||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  30219455 ggtgtatcaaagttaatttcgttagcggcaacttatctcgtgaatttcggttatttccaaaattttagccaatgtctgcttctcccatgcatttcaaagt 30219356  T
Q  491 tatctacaannnnnnnngtcaatgctcacttatcatgtgcatatgagttatttctaaaattttagtcaatgcccacttctcctatgc 577  Q
    ||| |||||        ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  30219355 tatttacaa-tttttttgtcaatgctcacttaacatgtgcatatgagttatttctaaaattttagtcattgcccacttctcccatgc 30219270  T

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Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 208 - 338
Target Start/End: Complemental strand, 30219670 - 30219540
Alignment:
Q  208 attttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgattaagttcaatatcattgtagaattgaagtgaagtgatattc 307  Q
    |||||||||| |||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30219670 attttagttaattacgatattttagatattgctcatttatcctctgcattttatttgattaagttcaatatcattgtagaattgaagtgaagtgatattc 30219571  T
Q  308 taaatgatataaaagttttatcaggatcaat 338  Q
    ||||| |||||||||||||||||||| ||||    
T  30219570 taaataatataaaagttttatcaggaacaat 30219540  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 205 - 340
Target Start/End: Complemental strand, 20201311 - 20201175
Alignment:
Q  205 tgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaagtgaagtgat 303  Q
    |||||||||||||||||| | |||||||| | ||  |||||||   |||||||||||||||| | |||||||| ||||||| ||||||||| || |||||    
T  20201311 tgcattttagttatttacaaaattttagacaatgtccatttattccgtgcattttagttgatgagagttcaatgtcattgtcgaattgaagcgaggtgat 20201212  T
Q  304 attctaaatgatataaaagttttatcaggatcaattt 340  Q
    ||||||||| ||||||||||||||||| || ||||||    
T  20201211 attctaaataatataaaagttttatcaagaccaattt 20201175  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 30219226 - 30219124
Alignment:
Q  251 gtgcattttagttgatta-agttcaatatcattgtagaattgaagtgaagtgatattctaaatgatataaaagttttatcaggatcaatttattaaaaat 349  Q
    ||||||||||||| || | |||||||||| ||||||||| |||||||||||||||||||||||  ||||||  ||||| || || |||||| ||| ||||    
T  30219226 gtgcattttagttaataagagttcaatataattgtagaaatgaagtgaagtgatattctaaatagtataaacattttaacatgaacaattttttataaat 30219127  T
Q  350 gac 352  Q
    |||    
T  30219126 gac 30219124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 20201421 - 20201343
Alignment:
Q  107 ttttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttact 185  Q
    |||||||||||| ||||||||| |||||||| ||| ||| |  ||||| ||| |||||||||| ||||||| |||||||    
T  20201421 ttttttataaatgacaacttgtctcgtgtatcaaacttagtccagtcaatgacaacttatcccatgcatttgagttact 20201343  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 20202035 - 20201993
Alignment:
Q  270 gttcaatatcattgtagaattgaagtgaagtgatattctaaat 312  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  20202035 gttcattatcattgtagaattgaagtgaggtgatattctaaat 20201993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 4291969 - 4292038
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  4291969 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaattttagtcaatg 4292038  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 33209313 - 33209244
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  33209313 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaattttagtcaatg 33209244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 37398759 - 37398690
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  37398759 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 37398690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 41778504 - 41778435
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  41778504 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 41778435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 50988372 - 50988303
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  50988372 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 50988303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 34041396 - 34041451
Alignment:
Q  399 aaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaatt 454  Q
    |||||||||||||| | || ||||||||||||||||||| ||||| |||| |||||    
T  34041396 aaagttagtttagtcaatgacaacttatctcgtgcatttgagttaattcttaaatt 34041451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 7715791 - 7715833
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcattt 437  Q
    ||||||||||||||||||||| | |||||| ||||||||||||    
T  7715791 tatcaaagttagtttagttagcgacaacttgtctcgtgcattt 7715833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 457
Target Start/End: Complemental strand, 10704949 - 10704887
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaatttta 457  Q
    ||||||||||| |||| || |||  ||||||||||||  |||| |||||||||||||||||||    
T  10704949 tatcaaagttaatttaatttgtgagaacttatctcgtatatttgagttatttctaaaatttta 10704887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 22521268 - 22521171
Alignment:
Q  56 aattgaagtgatatgttattttaagtagtataaacgttttatcgtgaacaattttttataaataacaacttgtgtcgtgtataaaagttaatttagtc 153  Q
    ||||||||| ||||| |||| ||| ||| |||||||||||| | |||||||||||  ||||||  ||||| || | || ||| ||||| |||||||||    
T  22521268 aattgaagtaatatgatattataaatagcataaacgttttagcatgaacaattttaaataaatgccaactggttttgtctatgaaagtaaatttagtc 22521171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 37397886 - 37397817
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | || ||| ||||||||||||  |||| || | ||||||||| |||||    
T  37397886 tatcaaagttagtttagttagcgacaccttctctcgtgcatttatgttacttttgaaattttagtcaatg 37397817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 37398200 - 37398139
Alignment:
Q  243 tttatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgat 303  Q
    |||||||||||||||| ||||||| |  |||||||||| ||||||||||||| ||| |||||    
T  37398200 tttatcttgtgcatttaagttgataagtgttcaatatcgttgtagaattgaattgaggtgat 37398139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 41777521 - 41777460
Alignment:
Q  243 tttatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgat 303  Q
    |||||| ||||||||||||||||| |  |||||||||| ||||||||||||| ||| |||||    
T  41777521 tttatcatgtgcattttagttgataagtgttcaatatcgttgtagaattgaattgaggtgat 41777460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 50987934 - 50987865
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||| |||| |||||||||| | |||||||||||||||||||  |||| || | ||||||||| |||||    
T  50987934 tatcatagtttgtttagttagcgacaacttatctcgtgcatttatgttacttttgaaattttagtcaatg 50987865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 50988251 - 50988190
Alignment:
Q  243 tttatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgat 303  Q
    ||||||||| |||||||||||||| |  |||||||||| ||||||||||||| ||| |||||    
T  50988251 tttatcttgagcattttagttgataagtgttcaatatcgttgtagaattgaattgaggtgat 50988190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 20200884 - 20200844
Alignment:
Q  271 ttcaatatcattgtagaattgaagtgaagtgatattctaaa 311  Q
    |||||||| ||||||||||| |||||| |||||||||||||    
T  20200884 ttcaatataattgtagaattaaagtgaggtgatattctaaa 20200844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 20202343 - 20202256
Alignment:
Q  81 tagtataaacgttttatcgtgaacaattttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatccc 169  Q
    |||| |||||||||||||  ||||||| |||||| ||| |||||||||  ||||||| ||||||| || || || ||||||||| ||||    
T  20202343 tagtgtaaacgttttatcaagaacaat-ttttattaatgacaacttgttccgtgtatcaaagttagttgagccaatgataacttctccc 20202256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 30219186 - 30219122
Alignment:
Q  59 tgaagtgatatgttattttaagtagtataaacgttttatcgtgaacaattttttataaataacaa 123  Q
    ||||||||  || |||| ||| |||||||||| ||||| | ||||||||||||||||||| ||||    
T  30219186 tgaagtgaagtgatattctaaatagtataaacattttaacatgaacaattttttataaatgacaa 30219122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 101 - 330
Target Start/End: Complemental strand, 27433404 - 27433163
Alignment:
Q  101 gaacaattttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaatttt---- 196  Q
    ||||||||||||||||||||||| ||||  | ||||| |||||||||||||| | |||||||||||||||||||||| ||||||| ||||||| ||        
T  27433404 gaacaattttttataaataacaatttgtcccatgtatcaaagttaatttagttagtgataacttatcccgtgcatttgagttacttctgaaatcttagtc 27433305  T
Q  197 ---------taatcttgtgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgattaag-ttcaatatcattgtag 286  Q
             | ||||| ||||||||| |||||||| |||||||||| | |  |||||||||| |||||||||||||||| | |  ||||||||||||| |    
T  27433304 aatgtttgcttatctt-tgcattttatttatttacaatattttagacaat-ttcatttatctcgtgcattttagttgatgatgaatcaatatcattgttg 27433207  T
Q  287 aattgaagtgaagtgatattctaaatgatataaaagttttatca 330  Q
    ||||||||  |||||||||||||||  ||||||| | |||||||    
T  27433206 aattgaagcaaagtgatattctaaacaatataaacgatttatca 27433163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 393 - 471
Target Start/End: Complemental strand, 27433372 - 27433294
Alignment:
Q  393 tgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgttagctt 471  Q
    ||||||||||||| |||||||||||  |||||||| ||||||||| ||||| |||| |||| |||| ||||||| ||||    
T  27433372 tgtatcaaagttaatttagttagtgataacttatcccgtgcatttgagttacttctgaaatcttagtcaatgtttgctt 27433294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 205 - 326
Target Start/End: Complemental strand, 27434050 - 27433929
Alignment:
Q  205 tgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaagtgaagtgat 303  Q
    ||||||||| |||||||| |||||||||| | ||  |||||| |  |||||||||||||||| | |||| ||||| ||| ||||||| |||||| |||||    
T  27434050 tgcattttatttatttacaatattttagacaatgtacatttaccc-gtgcattttagttgatgagagtttaatataattatagaattaaagtgatgtgat 27433952  T
Q  304 attctaaatgatataaaagtttt 326  Q
    |||||||||  |||||| |||||    
T  27433951 attctaaatattataaacgtttt 27433929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 34996935 - 34996866
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | |||||||||||||||    
T  34996935 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaattttagccaatg 34996866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 43250644 - 43250585
Alignment:
Q  254 cattttagttgattaag-ttcaatatcattgtagaattgaagtgaagtgatattctaaat 312  Q
    ||||||||||||| ||| ||| ||||| ||||||||||||||||| ||||||||||||||    
T  43250644 cattttagttgatgaaggttcgatatctttgtagaattgaagtgaggtgatattctaaat 43250585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 34997808 - 34997766
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcattt 437  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  34997808 tatcaaagttagtttagttagcgacaacttatctcgtgcattt 34997766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 20400299 - 20400368
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  20400299 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 20400368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 27433887 - 27433826
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaatttt 456  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| ||||| || | |||||||    
T  27433887 tatcaaagttagtttagttagtgacaacttatcccgtccatttgagttacttttgaaatttt 27433826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 27433968 - 27433825
Alignment:
Q  56 aattgaagtgatatgttattttaagtagtataaacgttttatcgtgaacaatttttt--ataaataacaacttgtgtcgtgtataaaagttaatttagtc 153  Q
    |||| ||||||| || |||| ||| || ||||||||||||  |   |||||||||||  ||||||||||| ||||  | | ||| ||||||| ||||||     
T  27433968 aattaaagtgatgtgatattctaaatattataaacgttttcgcaataacaatttttttgataaataacaatttgtcccttatatcaaagttagtttagtt 27433869  T
Q  154 attgataacttatcccgtgcatttaagttactcctgaaattttt 197  Q
    | ||| |||||||||||| ||||| |||||||  ||||||||||    
T  27433868 agtgacaacttatcccgtccatttgagttacttttgaaattttt 27433825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 577
Target Start/End: Complemental strand, 27434104 - 27434048
Alignment:
Q  521 tatcatgtgcatatgagttatttctaaaattttagtcaatgcccacttctcctatgc 577  Q
    |||||||||||| ||||||| || | |||||||| ||||||||||||||||| ||||    
T  27434104 tatcatgtgcatttgagttacttatgaaattttactcaatgcccacttctcccatgc 27434048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 17843145 - 17843103
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcattt 437  Q
    ||||||||||||||||||||| | |||||| ||||||||||||    
T  17843145 tatcaaagttagtttagttagcgacaacttgtctcgtgcattt 17843103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 20400420 - 20400481
Alignment:
Q  243 tttatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgat 303  Q
    |||||| ||||||||| ||||||| |  |||||||||||||||||||||||| ||| |||||    
T  20400420 tttatcatgtgcatttaagttgataagtgttcaatatcattgtagaattgaattgaggtgat 20400481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 13549643 - 13549603
Alignment:
Q  271 ttcaatatcattgtagaattgaagtgaagtgatattctaaa 311  Q
    |||||||||||| |||||||||||||  |||||||||||||    
T  13549643 ttcaatatcattttagaattgaagtgtggtgatattctaaa 13549603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 43250610 - 43250538
Alignment:
Q  56 aattgaagtgatatgttattttaagtagtataaacgttttatcgtgaacaattttttataaataacaacttgt 128  Q
    |||||||||||  || |||| ||| ||||| |||| ||||| |  |||||||||||||||||| |||||||||    
T  43250610 aattgaagtgaggtgatattctaaatagtagaaacattttagcaagaacaattttttataaatgacaacttgt 43250538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 10733 - 10829
Alignment:
Q  81 tagtataaacgttttatcgtgaacaattttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcattt 177  Q
    |||||||||| |||||||  || ||| ||||||||||||||||||||| ||  |||| |||||||||||||||  ||||||||||||||||||||||    
T  10733 tagtataaacattttatcaggagcaaatttttataaataacaacttgtttcaggtatcaaagttaatttagtcggtgataacttatcccgtgcattt 10829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 333
Target Start/End: Original strand, 10626 - 10754
Alignment:
Q  205 tgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaagtgaagtgat 303  Q
    ||||||||| ||||||||||||||||| | | | | || | |||| ||| |||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  10626 tgcattttatttatttacgatattttatacaatcc-cactcatctcgtgtattttagttgatgacagttcaatatcattgtagaattgaagcgaagtgat 10724  T
Q  304 attctaaatgatataaaagttttatcagga 333  Q
    |||||| ||  ||||||  |||||||||||    
T  10725 attctagatagtataaacattttatcagga 10754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 11338 - 11394
Alignment:
Q  254 cattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgatattcta 309  Q
    ||||||||||||| || ||| ||||||||||||||||||||| ||||||||||||||    
T  11338 cattttagttgatgaatgtttaatatcattgtagaattgaagcgaagtgatattcta 11394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 484
Target Start/End: Original strand, 10540 - 10632
Alignment:
Q  392 gtgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgttagcttctcccatgcattt 484  Q
    |||||||||||||| |||||| | || |||||||||| || ||||| ||||| || | ||||||| | ||||||| |||||| | ||||||||    
T  10540 gtgtatcaaagttaatttagtcaatgtcaacttatcttgtacatttgagttacttttgaaatttttgtcaatgttcgcttcttctatgcattt 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 10521 - 10605
Alignment:
Q  113 ataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaattttt 197  Q
    |||||| |||| ||||  ||||||| |||||||||||||||| ||  ||||||||  || ||||| |||||||  ||||||||||    
T  10521 ataaatgacaatttgtcccgtgtatcaaagttaatttagtcaatgtcaacttatcttgtacatttgagttacttttgaaattttt 10605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 204 - 330
Target Start/End: Complemental strand, 54960993 - 54960867
Alignment:
Q  204 gtgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaagtgaagtga 302  Q
    |||||||||| |||||||||||||| |||| | | |||| |||| |||||||||||||||||| | |||||||||||||| |||||||| ||  | ||||    
T  54960993 gtgcattttatttatttacgatattatagacaat-ctcacttatattgtgcattttagttgatgacagttcaatatcattatagaattggagcaaggtga 54960895  T
Q  303 tattctaaatgatataaaagttttatca 330  Q
    ||||||||||  |||||| |||||||||    
T  54960894 tattctaaatagtataaacgttttatca 54960867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 54960894 - 54960812
Alignment:
Q  72 tattttaagtagtataaacgttttatcgtgaacaattttttataaataacaacttgtgtcgtgtataaaagttaatttagtca 154  Q
    |||| ||| |||||||||||||||||| | |||||| |||||||||| ||||||||| |   |||| ||||||||||||||||    
T  54960894 tattctaaatagtataaacgttttatcataaacaatattttataaatgacaacttgtcttaggtatcaaagttaatttagtca 54960812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 37087274 - 37087205
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||||||||||||||||  |||| || | ||||||||| |||||    
T  37087274 tatcaaagttagtttagttagcgacaacttatctcgtgcatttatgttacttttgaaattttagtcaatg 37087205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 464
Target Start/End: Complemental strand, 54961073 - 54961006
Alignment:
Q  396 atcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    |||||||||||||| || |||| ||||||||||||||||||| ||||| |||| ||||||||| |||||    
T  54961073 atcaaagttagttt-gtcagtgacaacttatctcgtgcatttgagttacttctgaaattttagtcaatg 54961006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 320
Target Start/End: Complemental strand, 54961205 - 54961121
Alignment:
Q  237 tgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaagtgaagtgatattctaaatgatataaa 320  Q
    |||||| |||||| |||||||||| ||||| | |||||||||| ||||||||||| |||||| | |||||| ||||| |||||||    
T  54961205 tgctcacttatctcgtgcattttatttgatgagagttcaatattattgtagaattaaagtgatgcgatattataaataatataaa 54961121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 54961974 - 54961932
Alignment:
Q  270 gttcaatatcattgtagaattgaagtgaagtgatattctaaat 312  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  54961974 gttcaatgtcattgtagaattgaagtgatgtgatattctaaat 54961932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 54962337 - 54962247
Alignment:
Q  205 tgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgattaag-ttcaatatcattgtagaattgaag 294  Q
    |||||||||||||||||| | ||| |||| | ||  ||||||| | || ||||||||||||| | | ||||||||||||||||||||||||    
T  54962337 tgcattttagttatttacaaaattgtagacaatgtccatttatatcgttcattttagttgatgacggttcaatatcattgtagaattgaag 54962247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 18122391 - 18122322
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  18122391 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 18122322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 36031993 - 36032062
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  36031993 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 36032062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 37086401 - 37086332
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  37086401 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaattttagtcaatg 37086332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 54961102 - 54961014
Alignment:
Q  107 ttttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaatttt 196  Q
    |||||||||||||| |||||||  | || || ||||||| ||| |||| ||| |||||||| ||||||||| ||||||| ||||||||||    
T  54961102 ttttttataaataaaaacttgtcacatgcatcaaagttagttt-gtcagtgacaacttatctcgtgcatttgagttacttctgaaatttt 54961014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 458
Target Start/End: Original strand, 36032865 - 36032928
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttag 458  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | |||||||||    
T  36032865 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaattttag 36032928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 37086050 - 37086008
Alignment:
Q  270 gttcaatatcattgtagaattgaagtgaagtgatattctaaat 312  Q
    ||||||||||||| |||| |||||||||||||||||| |||||    
T  37086050 gttcaatatcattatagatttgaagtgaagtgatattataaat 37086008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 36032114 - 36032175
Alignment:
Q  243 tttatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgat 303  Q
    ||||||||| |||||||||||||| |  |||||||||| ||||||||||||| ||| |||||    
T  36032114 tttatcttgagcattttagttgataagtgttcaatatcgttgtagaattgaattgaggtgat 36032175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 36032986 - 36033047
Alignment:
Q  243 tttatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgat 303  Q
    |||||| ||||||||||||||||| |  |||||||||| ||||||||||||| ||| |||||    
T  36032986 tttatcctgtgcattttagttgatcagtgttcaatatcgttgtagaattgaattgaggtgat 36033047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 54962711 - 54962674
Alignment:
Q  272 tcaatatcattgtagaattgaagtgaagtgatattcta 309  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  54962711 tcaatgtcattgtagaattgaagtgaggtgatattcta 54962674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 205 - 351
Target Start/End: Original strand, 30696191 - 30696338
Alignment:
Q  205 tgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgattaag-ttcaatatcattgtagaattgaagtgaagtgat 303  Q
    |||||||||||||||||| | |||||||| | |   || |||||  |||||||||||||||| | | |||| | ||||||||||||||||| || |||||    
T  30696191 tgcattttagttatttacaaaattttagacaatatgcacttatcccgtgcattttagttgatgacggttcactgtcattgtagaattgaagcgacgtgat 30696290  T
Q  304 attctaaatgatataaaagttttatcaggatcaatttattaaaaatga 351  Q
    ||| ||||| ||||||| ||||| ||| ||||||||| ||| ||||||    
T  30696291 attataaataatataaatgttttctcaagatcaattttttataaatga 30696338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 30696054 - 30696151
Alignment:
Q  81 tagtataaacgttttatcgtgaacaat-tttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcattt 177  Q
    |||||||||||||||  |  ||||||| ||||||| |||||||||||||  || |||| ||| |||||||||||| ||| ||||||||||||||||||    
T  30696054 tagtataaacgtttttgcaagaacaatatttttattaataacaacttgtcccgcgtatcaaatttaatttagtcaatgacaacttatcccgtgcattt 30696151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 205 - 326
Target Start/End: Original strand, 30695946 - 30696068
Alignment:
Q  205 tgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaagtgaagtgat 303  Q
    ||||||||| |||||||||||||| |||| | ||  ||||||||  ||||||||| ||||||||  ||||||||| ||| |||| || |||||| |||||    
T  30695946 tgcattttatttatttacgatattatagacaatgtccatttatcccgtgcattttggttgattagggttcaatataattatagagttaaagtgatgtgat 30696045  T
Q  304 attctaaatgatataaaagtttt 326  Q
     ||||||||  |||||| |||||    
T  30696046 tttctaaatagtataaacgtttt 30696068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 5324277 - 5324213
Alignment:
Q  270 gttcaatatcattgtagaattgaagtgaagtgatattctaaatgatataaaagttttatcaggat 334  Q
    |||||||||||||||||||||||||||| || ||||| |||||  |||||| |||||| ||||||    
T  5324277 gttcaatatcattgtagaattgaagtgaggtcatattttaaatagtataaatgttttagcaggat 5324213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 484
Target Start/End: Complemental strand, 5323142 - 5323053
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgttagcttctcccatgcattt 484  Q
    ||||||||||| |||||||| || | ||||||| ||||||||| ||||| || | || |||||| |||||   |||||||||||||||||    
T  5323142 tatcaaagttaatttagttattgactacttatcccgtgcatttaagttaattttgaacttttagtcaatgcccgcttctcccatgcattt 5323053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 18754547 - 18754610
Alignment:
Q  241 catttatcttgtgcattttagttgattaagt--tcaatatcattgtagaattgaagtgaagtgat 303  Q
    ||||||||| |||||||||||||||| ||||  |||||| ||||||||||||||| |||||||||    
T  18754547 catttatctagtgcattttagttgat-aagtattcaataacattgtagaattgaattgaagtgat 18754610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 30693292 - 30693373
Alignment:
Q  270 gttcaatatcattgtagaattgaagtgaagtgatattctaaatgatataaaagttttatcaggatcaatttattaaaaatga 351  Q
    |||||||| |||| ||||||||||| || ||||||||||||||  |||||| | ||||||| || |||||| ||| ||||||    
T  30693292 gttcaataccattttagaattgaagcgatgtgatattctaaatagtataaacgctttatcaagaacaattttttataaatga 30693373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 5323138 - 5323094
Alignment:
Q  139 aaagttaatttagtcattgataacttatcccgtgcatttaagtta 183  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  5323138 aaagttaatttagttattgactacttatcccgtgcatttaagtta 5323094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 484
Target Start/End: Complemental strand, 5323937 - 5323845
Alignment:
Q  392 gtgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgttagcttctcccatgcattt 484  Q
    ||||||||||||||||||||||  || |||||||| |||||||||| ||||| || | || |||| | |||||    ||||||||||||||||    
T  5323937 gtgtatcaaagttagtttagttgatgacaacttatttcgtgcatttgagttacttttgaattttttgtcaatgcccacttctcccatgcattt 5323845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 5324078 - 5323975
Alignment:
Q  224 atattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaagtgaagtgatattctaaatgatataaaag 322  Q
    |||||||||| | || |||||||||  ||||||||||||| || | |||||||||| ||| ||||||| |||||| ||||| ||||| ||  |||||| |    
T  5324078 atattttagacaatgttcatttatcccgtgcattttagttaatgagagttcaatataattatagaattaaagtgatgtgatgttctagatagtataaacg 5323979  T
Q  323 tttt 326  Q
    ||||    
T  5323978 tttt 5323975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 5324689 - 5324566
Alignment:
Q  208 attttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgattaag-ttcaatatcattgtagaattgaagtgaagtgatatt 306  Q
    ||||||||||||||| | |||||||| | |||  | ||||| ||| |||| |||||||| | | |||||||||||| || |||||||||||  ||||| |    
T  5324689 attttagttatttacaaaattttagacaatgccaacttatcatgtccattatagttgatgaggattcaatatcattttaaaattgaagtgagatgatact 5324590  T
Q  307 ctaaatgatataaaagttttatca 330  Q
    ||||||  |||||| | |||||||    
T  5324589 ctaaatagtataaacgctttatca 5324566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 30693309 - 30693404
Alignment:
Q  56 aattgaagtgatatgttattttaagtagtataaacgttttatcgtgaacaattttttataaataacaacttgtgtcgtgtataaaagttaatttag 151  Q
    |||||||| ||| || |||| ||| ||||||||||| ||||||  |||||||||||||||||| | || ||||  || |||| ||||||| |||||    
T  30693309 aattgaagcgatgtgatattctaaatagtataaacgctttatcaagaacaattttttataaatgagaatttgtcccgcgtatcaaagttagtttag 30693404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 5323242 - 5323200
Alignment:
Q  270 gttcaatatcattgtagaattgaagtgaagtgatattctaaat 312  Q
    ||||||||||||||||||||||||||||  ||||||| |||||    
T  5323242 gttcaatatcattgtagaattgaagtgagatgatattttaaat 5323200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 5324181 - 5324139
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcattt 437  Q
    |||||||||||||| ||||||||||||| |||| |||||||||    
T  5324181 tatcaaagttagttgagttagtggcaacgtatcccgtgcattt 5324139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 5324797 - 5324727
Alignment:
Q  115 aaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttact 185  Q
    |||||||||||| | |||||||| ||||||| |||||||  ||| ||| ||| |||||||||| |||||||    
T  5324797 aaataacaacttctctcgtgtatcaaagttagtttagtcgatgacaacatattccgtgcatttgagttact 5324727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 457
Target Start/End: Original strand, 26417023 - 26417061
Alignment:
Q  419 caacttatctcgtgcatttcagttatttctaaaatttta 457  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  26417023 caacttatctcatgcatttgagttatttctaaaatttta 26417061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 18753913 - 18753954
Alignment:
Q  271 ttcaatatcattgtagaattgaagtgaagtgatattctaaat 312  Q
    |||||||||||| |||||||||||||| |||||||| |||||    
T  18753913 ttcaatatcattatagaattgaagtgatgtgatattataaat 18753954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 30695768 - 30695808
Alignment:
Q  271 ttcaatatcattgtagaattgaagtgaagtgatattctaaa 311  Q
    |||||||||||| |||||||||||||  |||||||||||||    
T  30695768 ttcaatatcattatagaattgaagtgtggtgatattctaaa 30695808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 108 - 309
Target Start/End: Complemental strand, 1077537 - 1077323
Alignment:
Q  108 tttttataaataacaacttgtgtcgtgtat-aaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaattttt--aatctt- 203  Q
    ||||||||||||||||||| |  | ||||| ||||||||||||||||| ||| ||||||| |||||||||| |||||||  | |||||||   ||| ||     
T  1077537 tttttataaataacaacttctcccatgtatcaaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttaaaattttgtcaatgttt 1077438  T
Q  204 ---------gtgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaa 293  Q
             |||||||||| ||| ||||||||||||| | | | | || ||| || ||| |||||||||||| | |||||||||||||||||||||||||    
T  1077437 gcttcttctgtgcattttatttaattacgatattttatacaat-cacacttacctcgtgtattttagttgatgacagttcaatatcattgtagaattgaa 1077339  T
Q  294 gtgaagtgatattcta 309  Q
    | ||||||||||||||    
T  1077338 gcgaagtgatattcta 1077323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 309
Target Start/End: Complemental strand, 1078119 - 1077907
Alignment:
Q  108 tttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaattttt--aatct--- 202  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||| ||| | | ||| |||||||||||||| |||  |||||||||   ||| |       
T  1078119 tttttataaataacaacttctc-cgtgtatcaaagttaatttagtcagtgacagcatataccgtgcatttaagtgacttttgaaattttgtcaatgtctg 1078021  T
Q  203 -------tgtgcattttagttatttacgatattttagatattgctcatttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaag 294  Q
           ||||||||||| ||| ||||||||||||| | | | | || |||||| ||  |||||||||||| | ||||||||||||||||||||||||||    
T  1078020 cttcttctgtgcattttatttaattacgatattttatacaat-cacacttatctcgtatattttagttgatgacagttcaatatcattgtagaattgaag 1077922  T
Q  295 tgaagtgatattcta 309  Q
     ||||||||||||||    
T  1077921 cgaagtgatattcta 1077907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 1076927 - 1076832
Alignment:
Q  102 aacaattttttataaataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaattttt 197  Q
    ||||| |||||  |||||||||||| |   |||||| |||||||||||||||| ||| ||||||| |||||||||| |||||||  ||||||||||    
T  1076927 aacaacttttttaaaataacaacttctcgtgtgtatcaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttgaaattttt 1076832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 1076529 - 1076472
Alignment:
Q  241 catttatcttgtgcattttagttgatta-agttcaatatcattgtagaattgaagtga 297  Q
    ||||||||| |||||||||||||||| |  ||||||||| ||||||||||| ||||||    
T  1076529 catttatctcgtgcattttagttgatgagggttcaatataattgtagaattaaagtga 1076472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 1076705 - 1076633
Alignment:
Q  81 tagtataaacgttttatcgtgaacaattttttataaataacaacttgtgtcgtgtataaaagttaatttagtc 153  Q
    |||||||||  ||||||| ||||||| |||||||||||  ||||||||  |  |||| |||||||||||||||    
T  1076705 tagtataaatattttatcatgaacaaatttttataaatggcaacttgttccaggtatcaaagttaatttagtc 1076633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 1076897 - 1076833
Alignment:
Q  392 gtgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaatttt 456  Q
    |||||||||||||| |||||| |||| ||||||||  ||||||||| ||||| || | |||||||    
T  1076897 gtgtatcaaagttaatttagtcagtgacaacttataccgtgcatttgagttacttttgaaatttt 1076833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 484
Target Start/End: Complemental strand, 1078290 - 1078198
Alignment:
Q  392 gtgtatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgttagcttctcccatgcattt 484  Q
    |||||||| |||||||||| | | || ||| ||||| | ||||||| ||||| |||| ||||||||  |||||   |||||||||||||||||    
T  1078290 gtgtatcatagttagtttaatcaatgacaatttatcccatgcatttgagttacttctgaaattttactcaatgcccgcttctcccatgcattt 1078198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 1078306 - 1078226
Alignment:
Q  116 aataacaacttgtgtcgtgtataaaagttaatttagtcattgataacttatcccgtgcatttaagttactcctgaaatttt 196  Q
    |||||||||||   |||||||| | ||||| |||| ||| ||| || ||||||| ||||||| ||||||| ||||||||||    
T  1078306 aataacaacttcactcgtgtatcatagttagtttaatcaatgacaatttatcccatgcatttgagttacttctgaaatttt 1078226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 9327 - 9396
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | || ||||||||||||||||  |||| || | ||||||||| |||||    
T  9327 tatcaaagttagtttagttagcgacagcttatctcgtgcatttatgttacttttgaaattttagtcaatg 9396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 46364434 - 46364503
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  46364434 tatcaaagttagtttagttagcgacaacttgtctcgtgcatttatgttacttttgaaattttagtcaatg 46364503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 46365308 - 46365377
Alignment:
Q  395 tatcaaagttagtttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatg 464  Q
    ||||||||||||||||||||| | |||||| ||||||||||||  |||| || | ||||||||| |||||    
T  46365308 tatcaaagttagtttagttagcgacaacttctctcgtgcatttatgttacttttgaaattttagtcaatg 46365377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 8548290 - 8548334
Alignment:
Q  269 agttcaatatcattgtagaattgaagtgaagtgatattctaaatg 313  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||    
T  8548290 agtttaatatcattgtaaaattgaagcgaagtgatattctaaatg 8548334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 13643377 - 13643302
Alignment:
Q  408 ttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgttagcttctcccatgcattt 484  Q
    ||||||||||||||||||| ||||| |||| ||||| |||||||||||||| ||| |    ||||||||||||||||    
T  13643377 ttagttagtggcaacttat-tcgtgtatttgagttaattctaaaattttagtcaaggcccacttctcccatgcattt 13643302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 484
Target Start/End: Complemental strand, 13743802 - 13743727
Alignment:
Q  408 ttagttagtggcaacttatctcgtgcatttcagttatttctaaaattttagccaatgttagcttctcccatgcattt 484  Q
    ||||||||||||||||||| ||||| |||| ||||| |||||||||||||| ||| |    ||||||||||||||||    
T  13743802 ttagttagtggcaacttat-tcgtgtatttgagttaattctaaaattttagtcaaggcccacttctcccatgcattt 13743727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 577
Target Start/End: Complemental strand, 13643349 - 13643306
Alignment:
Q  534 tgagttatttctaaaattttagtcaatgcccacttctcctatgc 577  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||    
T  13643349 tgagttaattctaaaattttagtcaaggcccacttctcccatgc 13643306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 577
Target Start/End: Complemental strand, 13743774 - 13743731
Alignment:
Q  534 tgagttatttctaaaattttagtcaatgcccacttctcctatgc 577  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||    
T  13743774 tgagttaattctaaaattttagtcaaggcccacttctcccatgc 13743731  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 13643791 - 13643702
Alignment:
Q  245 tatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgatattctaaatgatataaaagttttatcagga 333  Q
    |||| |||| |||||||||||| |  ||||||||| ||||||||| | |||||| ||||||||||||||  || ||| |||||| |||||    
T  13643791 tatcatgtgtattttagttgatgatcgttcaatattattgtagaaataaagtgaggtgatattctaaatagtaaaaacgttttagcagga 13643702  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 13744216 - 13744127
Alignment:
Q  245 tatcttgtgcattttagttgattaa-gttcaatatcattgtagaattgaagtgaagtgatattctaaatgatataaaagttttatcagga 333  Q
    |||| |||| |||||||||||| |  ||||||||| ||||||||| | |||||| ||||||||||||||  || ||| |||||| |||||    
T  13744216 tatcatgtgtattttagttgatgatcgttcaatattattgtagaaataaagtgaggtgatattctaaatagtaaaaacgttttagcagga 13744127  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 13643304 - 13643200
Alignment:
Q  210 tttagttatttacgatattttagata-ttgctcatttatcttgtgcattttagttgattaagttc-aatatcattgtagaattgaagtgaagtgatattc 307  Q
    |||||||||||| || |||||||  | |||| || ||||| |||||||||||||| || | |||  ||| ||||||||||||||||||||  |||||||     
T  13643304 tttagttatttatgaaattttagtcaattgcgcacttatcctgtgcattttagtttatgaggtttgaatgtcattgtagaattgaagtgagatgatattt 13643205  T
Q  308 taaat 312  Q
    |||||    
T  13643204 taaat 13643200  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 13743729 - 13743625
Alignment:
Q  210 tttagttatttacgatattttagata-ttgctcatttatcttgtgcattttagttgattaagttc-aatatcattgtagaattgaagtgaagtgatattc 307  Q
    |||||||||||| || |||||||  | |||| || ||||| |||||||||||||| || | |||  ||| ||||||||||||||||||||  |||||||     
T  13743729 tttagttatttatgaaattttagtcaattgcgcacttatcctgtgcattttagtttatgaggtttgaatgtcattgtagaattgaagtgagatgatattt 13743630  T
Q  308 taaat 312  Q
    |||||    
T  13743629 taaat 13743625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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