View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15299_low_62 (Length: 230)
Name: NF15299_low_62
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_62 |
 | |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 30304319 - 30304516
Alignment:
| Q |
17 |
caaaggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304319 |
caaaggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaa |
30304418 |
T |
|
| Q |
117 |
gttcctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggtgttctttccatcataatctttgacacataatc |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304419 |
gttcctttagcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatc |
30304516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 30280937 - 30280740
Alignment:
| Q |
17 |
caaaggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30280937 |
caaaggaagagaagggtcatcagctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaa |
30280838 |
T |
|
| Q |
117 |
gttcctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggtgttctttccatcataatctttgacacataatc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30280837 |
gttcctttagcattgcttgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatc |
30280740 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 30271252 - 30271449
Alignment:
| Q |
17 |
caaaggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30271252 |
caaaggaagagaagggtcatcagctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaa |
30271351 |
T |
|
| Q |
117 |
gttcctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggtgttctttccatcataatctttgacacataatc |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30271352 |
gttcctttagcatttcttgttggatatttaattaaatgtatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacataatc |
30271449 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 30220366 - 30220198
Alignment:
| Q |
20 |
aggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagtt |
119 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30220366 |
aggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagtt |
30220267 |
T |
|
| Q |
120 |
cctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggtgttctt |
188 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
30220266 |
cctttagcattgcttgttggatatttaatcaaatgaatttcccaaaggggtttatcttgaggtgttctt |
30220198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 30264358 - 30264552
Alignment:
| Q |
17 |
caaaggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaa |
116 |
Q |
| |
|
||||||||||||||| |||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
30264358 |
caaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatg |
30264457 |
T |
|
| Q |
117 |
gttcctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggtgttctttccatcataatctttgacacata |
211 |
Q |
| |
|
|| |||||||||||||||||| || || | ||| |||||||||||||||||||||| |||||| ||||| || | |||||||||||||| |
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|
| T |
30264458 |
gtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacata |
30264552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 30287830 - 30287636
Alignment:
| Q |
17 |
caaaggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaa |
116 |
Q |
| |
|
||||||||||||||| |||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
30287830 |
caaaggaagagaaggatcatcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatg |
30287731 |
T |
|
| Q |
117 |
gttcctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggtgttctttccatcataatctttgacacata |
211 |
Q |
| |
|
|| |||||||||||||||||| || || | ||| |||||||||||||||||||||| |||||| ||||| || | |||||||||||||| |
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|
| T |
30287730 |
gtgtaagcagcattgcttgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacata |
30287636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 30048559 - 30048724
Alignment:
| Q |
20 |
aggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagtt |
119 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | || |
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|
| T |
30048559 |
aggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtg |
30048658 |
T |
|
| Q |
120 |
cctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggtgtt |
185 |
Q |
| |
|
| ||||||| |||||||||| || || | ||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
30048659 |
caagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgtt |
30048724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 30062900 - 30063065
Alignment:
| Q |
20 |
aggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagtt |
119 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | || |
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|
| T |
30062900 |
aggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtg |
30062999 |
T |
|
| Q |
120 |
cctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggtgtt |
185 |
Q |
| |
|
| ||||||| |||||||||| || || | ||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
30063000 |
caagcagcattggttgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgtt |
30063065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 30032311 - 30032483
Alignment:
| Q |
18 |
aaaggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaag |
117 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | | |
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|
| T |
30032311 |
aaaggaagagaaggatcatcagctctttgaagacaagaaagaagagcacccatgagagagtaaccgtcaccaagtgcatgatgaagtttgaatattatgg |
30032410 |
T |
|
| Q |
118 |
ttcctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggtgttctttc |
190 |
Q |
| |
|
| | ||||| |||||||||| || || | ||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
30032411 |
tgcaagcttcattggttgttggataattgataatatgaatttcccaaagtggtttatcttgtggtgttctttc |
30032483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 30228698 - 30228866
Alignment:
| Q |
20 |
aggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagtt |
119 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| | || |
|
|
| T |
30228698 |
aggaagagaaggatcatcagctctttgaagacaagaaagaagagcactcatgagagagtaaccatcaccaagtgcatgattaagtttgaatattatggtg |
30228797 |
T |
|
| Q |
120 |
cctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggtgttctt |
188 |
Q |
| |
|
| ||||||| |||||||||| || || | ||| ||||||||||| ||||| | ||||||||||||| |
|
|
| T |
30228798 |
caagcagcattggttgttggataattgataatatgaatttcccaaagtggtttattttgtggtgttctt |
30228866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 2311479 - 2311384
Alignment:
| Q |
17 |
caaaggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatat |
112 |
Q |
| |
|
|||||||||||| || |||||| | | |||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
2311479 |
caaaggaagagatggatcatcagcacgttgtagacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatat |
2311384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 29483208 - 29483334
Alignment:
| Q |
24 |
agagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctt |
123 |
Q |
| |
|
|||||||| |||||| ||||||| || | ||||||| ||||||||||| ||| ||||| |||| ||||||||||| |||||| | ||| |||||| |
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|
| T |
29483208 |
agagaaggatcatcagctctttgaaggctcgaaagaatgacacccatgagattgtagccatctccaattgcatggtgaaatttgaacaccaaggttcctg |
29483307 |
T |
|
| Q |
124 |
tagcattgcttgttggatatttaatta |
150 |
Q |
| |
|
|||||||||||| || ||||| |||| |
|
|
| T |
29483308 |
cagcattgcttgtggggtatttgatta |
29483334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 79534 - 79695
Alignment:
| Q |
21 |
ggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttc |
120 |
Q |
| |
|
||||||||||||| |||| |||||| || ||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||| || || | |
|
|
| T |
79534 |
ggaagagaagggttatcagctctttctaaacatgaaagaagtgcacccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtac |
79633 |
T |
|
| Q |
121 |
ctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggt |
182 |
Q |
| |
|
| ||||| |||||||||||||||| | ||| || |||||||| ||| | ||||||||| |
|
|
| T |
79634 |
cagctgcattttttgttggatatttaataatatgtatctcccaaagtggtctatcttgtggt |
79695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 72470 - 72631
Alignment:
| Q |
21 |
ggaagagaagggtcatcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttc |
120 |
Q |
| |
|
|||||| |||||| |||| |||||| || ||| || |||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||| || || | |
|
|
| T |
72470 |
ggaagaaaagggttatcagctctttctaaacatgatagaagagctcccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtac |
72569 |
T |
|
| Q |
121 |
ctttagcattgcttgttggatatttaattaaatgcatttcccaaaggggtttgtcttgtggt |
182 |
Q |
| |
|
| ||||| |||||||||||||||| | ||| |||||||| || ||| | ||||||||| |
|
|
| T |
72570 |
cagctgcattttttgttggatatttaataatatgaatttcccatagtggtctatcttgtggt |
72631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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