View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_64 (Length: 227)
Name: NF15299_low_64
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 7236825 - 7237050
Alignment:
| Q |
1 |
tgttaccttgcctcagtatgatgataaagatgaccctaaattattcaatcaaagagttgtacaattttcaaagttattgaataaagattcactagagaag |
100 |
Q |
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| T |
7236825 |
tgttaccttgcctcagtatgatgataaagatgaccctaaattattcaatcaaagagttgtacaattttcaaagttattgaataaagattcactagagaag |
7236924 |
T |
|
| Q |
101 |
ttgcattatttgcatgcagtcataactgagacactaagattgtatcctgcggttcctcaggtatgcattttttggatctaaatatggtagttttgtaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7236925 |
ttgcattatttgcatgcagtcataactgagacactaagattgtatcctgcggttcctcaggtatgcattttttggatctaaatatggtagttttgtaatg |
7237024 |
T |
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| Q |
201 |
aaaattgaaaacatgaaacataatct |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7237025 |
aaaattgaaaacatgaaacataatct |
7237050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 49591198 - 49591019
Alignment:
| Q |
1 |
tgttaccttgcctcagtatgatgataaagatgaccctaaattattcaatcaaagagttgtacaattttcaaagttattgaataaagattcactagagaag |
100 |
Q |
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|||||| |||||||| | ||||||||||||||||| | |||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49591198 |
tgttacattgcctcaatgtgatgataaagatgaccttgaattgttcaatcaaagggtagtacaattttcaaagttattgaataaagattcactagagaag |
49591099 |
T |
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| Q |
101 |
ttgcattatttgcatgcagtcataactgagacactaagattgtatcctgcggttcctcaggtatgcattttttggatcta |
180 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| |||| |
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| T |
49591098 |
ttgcattatttgcatgcagtcataactgagactctaagattgtatccggcagttcctcaggtatgcattttttgggtcta |
49591019 |
T |
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