View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_low_68 (Length: 224)

Name: NF15299_low_68

Description: NF15299

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15299_low_68

[»] chr7 (3 HSPs)

Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 3)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 107; E-Value: 8e-54

Query Start/End: Original strand, 102 - 208

Target Start/End: Complemental strand, 37442325 - 37442219

Alignment:

Q	102	catggattgaggatagaaatggtagtggatttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctc	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37442325	catggattgaggatagaaatggtagtggatttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctc	37442226	T

Q	202	ttgttat	208	Q
		\|\|\|\|\|\|\|
T	37442225	ttgttat	37442219	T

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Target: chr7; HSP #2

Raw Score: 54; E-Value: 4e-22

Query Start/End: Original strand, 1 - 58

Target Start/End: Complemental strand, 37442427 - 37442370

Alignment:

Q	1	ttaaacctatacactcatactgctcaaaaaatatgcttccaaagtgtaatatatgaag	58	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37442427	ttaaacctatatactcatactgctcaaaaaatatgcttccaaagtgtaatatatgaag	37442370	T

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Target: chr7; HSP #3

Raw Score: 45; E-Value: 8e-17

Query Start/End: Original strand, 106 - 203

Target Start/End: Complemental strand, 34940106 - 34940013

Alignment:

Q	106	gattgaggatagaaatggtagtggatttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctctt	203	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|
T	34940106	gattgaggacagaaatggatgtggatttgttgtctctacaggtaa----caacttatctgttgtgtagaggatttggaccagtgtacactttcctctt	34940013	T

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