View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_7 (Length: 567)
Name: NF15299_low_7
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 36 - 549
Target Start/End: Complemental strand, 55402661 - 55402135
Alignment:
| Q |
36 |
atcaatgctatgagcaaaaggtcaatgggaaaactcaattcttttgtgaggctcttaaatatgaga-------------atgttgtgagtataaatctca |
122 |
Q |
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| T |
55402661 |
atcaatgctatgagcaaaaggtcaatgggaaaactcaattcttttgtgaggctcttaaatatgagactaatgaatgataatgttgtgagtataaatctca |
55402562 |
T |
|
| Q |
123 |
aagggaatgccaatccaaaaacactaatctatttttgtgtgactaacgaataaaaagaagnnnnnnngactaatattaactgtgagattcactgcaaaac |
222 |
Q |
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| T |
55402561 |
aagggaatgccaatccaaaaagactaatctatttttgtttgactaacgaataaaaagaagaaaaaaagactaatattaactgtgagattcactgcaaaac |
55402462 |
T |
|
| Q |
223 |
ttattaataatcttgttaaacnnnnnnnggactcgtaatattgcactaccgttcatgagccgatgtcttcaacaacgttcactccacaacactttatttg |
322 |
Q |
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| T |
55402461 |
ttattaataatcttgttaaacaaaaaaaggactcgtaatattgcactaccgttcatgagccgatgtcttcaacaacgttcactccacaacactttatttg |
55402362 |
T |
|
| Q |
323 |
accaacctctcgacaaaaacacgagtgttgttgtgaccataaaatgaagaggtaattttaaaagactggtttattagatgaaagtgtttctagttgtaca |
422 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
55402361 |
accaacctctcgacaaaaacacaagtgttgttgtgaccataaaatgaagaggtaattttaaaagactagtttattagatgaaagtgtttctagttataca |
55402262 |
T |
|
| Q |
423 |
agctccagttttgaggcgagtctttctgaagtcggactcgtataagggtggacacttattaggttcggttggcttcggtccataaatgataaatccgaag |
522 |
Q |
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||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
55402261 |
agctccagttttgaggcgaatctttctgaagtagaacttgtataagggtggacacttattaggttcggtcggcttcggtccagaaatgacaaatccgaag |
55402162 |
T |
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| Q |
523 |
aaaaatgtggttggtaatgttaggcct |
549 |
Q |
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| T |
55402161 |
aaaaatgtggttggtaatgttatgcct |
55402135 |
T |
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