View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15299_low_70 (Length: 222)
Name: NF15299_low_70
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15299_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 700047 - 699858
Alignment:
| Q |
18 |
ataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaaaa |
117 |
Q |
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| T |
700047 |
ataccaactccatcttgataatcatatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaaaa |
699948 |
T |
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| Q |
118 |
aattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaagaatcaaaataagggttcat |
207 |
Q |
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| T |
699947 |
aattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacgaaagaatcaaaataagggttcat |
699858 |
T |
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Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 23262078 - 23262265
Alignment:
| Q |
20 |
accaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaaaaaa |
119 |
Q |
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|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||| |
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| T |
23262078 |
accacctccatcttaataatcgtatactcttgcggctgaacaccttcaccactagccctatcatgatccgcacaaggctgtccatccaatggcgaaaaaa |
23262177 |
T |
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| Q |
120 |
ttgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaagaatcaaaataagggttcat |
207 |
Q |
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| T |
23262178 |
ctgtatacctaacatccttaacaaccttaccagacgccttcaacttcctcatatgccacctaacaaaagcatcaaaataaggattcat |
23262265 |
T |
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