View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15299_low_9 (Length: 528)

Name: NF15299_low_9
Description: NF15299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15299_low_9
NF15299_low_9
[»] chr8 (1 HSPs)
chr8 (3-528)||(8636008-8636516)
[»] chr7 (2 HSPs)
chr7 (445-528)||(48617646-48617729)
chr7 (34-95)||(48617796-48617857)


Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 3 - 528
Target Start/End: Original strand, 8636008 - 8636516
Alignment:
Q  3 tcaccaccctcttctctttgccaatgctctcttcttcttcaatgtcaatatcatcttctggctcattggtcaaatccaatctagtcactgggtacataca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8636008 tcaccaccctcttctctttgccaatgctctcttcttcttcaatgtcaatatcatcttctggctcattggtcaaatccaatctagtcactgggtacataca 8636107  T
Q  103 aatccaatctttcatcatattaattgcatttgtcccactgacacagacacctgacacaactatgacaccgacacattaacactgatcattacttgagaga 202  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8636108 aatccaatctttcatcatattaattgcattcgtcccactgacagagacacctgacacaactatgacaccgacacattaacactgatcattacttgagaga 8636207  T
Q  203 atcacatgattgaatgtaattacattggtggcagacttgtcggacaccggcatgtgtcatacatcagacaaacacatattaatttgatatttgattagaa 302  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||    
T  8636208 atcacataattgaatgtaattacatcggtggcagacttgtcggaca-----------------tcagacaaacacatattaatttgatatttgattagaa 8636290  T
Q  303 gtgtcgtgctgctgcagagtactaatgtgattgaaaaatttaaaattttgctaatttaaacgacccagttgattaaatgattcaatttttaaattttgct 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8636291 gtgtcgtgctgctgcagagtactaatgtgattgaaaaatttaaaattttgctaatttaaacgacccagttgattaaatgattcaatttttaaattttgct 8636390  T
Q  403 ttctgagtatgtataaagttgacatttttattgttagtgatgatgcagttgattgatccatattggacagtgattcctgtgatgcttgttcattgctatg 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8636391 ttctgagtatgtataaagttgacatttttattgttagtgatgatgcagttgattgatccatattggacagtgattcctgtgatgcttgttcattactatg 8636490  T
Q  503 caacacaccctttggctcaatatgat 528  Q
    ||||||||||||||||||||||||||    
T  8636491 caacacaccctttggctcaatatgat 8636516  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 445 - 528
Target Start/End: Complemental strand, 48617729 - 48617646
Alignment:
Q  445 atgcagttgattgatccatattggacagtgattcctgtgatgcttgttcattgctatgcaacacaccctttggctcaatatgat 528  Q
    |||||| ||||||| || |||||||||||||| |||||||||||||| ||||  |||||| | |||||||||||||| ||||||    
T  48617729 atgcagatgattgacccttattggacagtgatacctgtgatgcttgtccattattatgcagcccaccctttggctcactatgat 48617646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 48617857 - 48617796
Alignment:
Q  34 ttcttcttcaatgtcaatatcatcttctggctcattggtcaaatccaatctagtcactgggt 95  Q
    ||||||||||| ||||||||| |||| |||||||| | || ||||||||| || ||||||||    
T  48617857 ttcttcttcaacgtcaatatcctcttttggctcatcgctctaatccaatccagccactgggt 48617796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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