View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_13 (Length: 382)
Name: NF1529_high_13
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 14857968 - 14858320
Alignment:
| Q |
13 |
attctcagctcttctactgatattgagaggcacacggtggattacttaaccaagatttttgctactcctaatcaggttatggcgaattctcttccggata |
112 |
Q |
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| T |
14857968 |
attctcagctcttctactgatattgagaggcacacggtggattacttaaccaagatttttgctgctccaaatcaggttatggcgaattctcttccggata |
14858067 |
T |
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| Q |
113 |
agcttattcctcgactggtcactgatattgaaaatactcagcttacatctcttccttctatggagtaaattaaacaagctgtgttttctcttaatggaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| ||||||||||||| |
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| T |
14858068 |
agcttattcctcgactggtcactgatattgaaaatactcagcttacatctcttccttctatgaaggaaattaaacaagccgtgtttgctcttaatggaga |
14858167 |
T |
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| Q |
213 |
ttctgctccaggtcctgatggattttccggatgcttctatcatcatttctgatctattattgggtctgatgtcgtcaagtccactcaannnnnnncacca |
312 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14858168 |
ttctgctccaggtcctgatggcttttccggatgcttttatcatcatttctgatctattattgggtctgatgtcgtcaagtccactcaatttatttcacca |
14858267 |
T |
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| Q |
313 |
acaatcacattcttccgaatctgaactccaatctgattgtgctggttcccaaa |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14858268 |
acaatcacattcttccgaatctgaactccaatctgattgtgctggttcccaaa |
14858320 |
T |
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