View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1529_high_16 (Length: 338)
Name: NF1529_high_16
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 33810399 - 33810616
Alignment:
| Q |
9 |
tagataatactatacttgattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810399 |
tagacaatactatacttgattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaat |
33810498 |
T |
|
| Q |
109 |
tttcatcatactatgtcaagaaacacataaaatttcattcaccatcaatcaacaaattgacacattgaaagaaaagccaactaacctcgtcggcagtgat |
208 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33810499 |
ttttatcatactatgtcaagaaaaacataaaatttcattcaccatcaatccacaaattgacacattgaaagaaaagccaactaacctcatcggcagtgat |
33810598 |
T |
|
| Q |
209 |
aatcgccttgatatgctg |
226 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33810599 |
aatcgccttgatatgctg |
33810616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 33869868 - 33870085
Alignment:
| Q |
9 |
tagataatactatacttgattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33869868 |
tagacaatactatacttgattatttaatgtgcgcatacgacacttgtagttacttttaagatgcaaatacaaagtgaggttatacagcaatacagtgaat |
33869967 |
T |
|
| Q |
109 |
tttcatcatactatgtcaagaaacacataaaatttcattcaccatcaatcaacaaattgacacattgaaagaaaagccaactaacctcgtcggcagtgat |
208 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33869968 |
ttttatcatactatgtcaagaaaaacataaaatttcattcaccatcaatccacaaattgacacattgaaagaaaagccaactaacctcatcggcagtgat |
33870067 |
T |
|
| Q |
209 |
aatcgccttgatatgctg |
226 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33870068 |
aatcgccttgatatgctg |
33870085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 24409179 - 24409104
Alignment:
| Q |
151 |
catcaatcaacaaattgacacattgaaagaaaagccaactaacctcgtcggcagtgataatcgccttgatatgctg |
226 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| |||||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
24409179 |
catcaatcaacatattcacacattgaaagaaaaggtaactaacctcatcagcagtgataatcaccttgatatgctg |
24409104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 24409828 - 24409980
Alignment:
| Q |
73 |
aaatacaaagtgaggttatacagcaatacagtgaattttcatcatactatgtcaagaaacacataaaatttcattcac---catcaatcaacaaattgac |
169 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||| ||| || | ||||||||||| || | ||||| |||||| |||||||||||| ||| || |
|
|
| T |
24409828 |
aaatgcaaagtgaggttaagcatcaatacagtgaattctcaccaaa--atgtcaagaaaaac--acaattttattcaccatcatcaatcaacatattcac |
24409923 |
T |
|
| Q |
170 |
acattgaaagaaaagccaactaacctcgtcggcagtgataatcgccttgatatgctg |
226 |
Q |
| |
|
||||||||||||||| |||||||||| || || ||||||||| |||||||||||| |
|
|
| T |
24409924 |
acattgaaagaaaaggtaactaacctcatcagcggtgataatcatcttgatatgctg |
24409980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University