View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_18 (Length: 328)
Name: NF1529_high_18
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 52604680 - 52604981
Alignment:
| Q |
18 |
ataacctgttaattcaaacacattaaatcagcttaactatattacattacatactcctatattacttaatggaagagaaaacatgtt-gtccatgtccat |
116 |
Q |
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| T |
52604680 |
ataacctgttaattcaaacacattaaatcagcttaactatattacattacatactcctatattacttaatggaagagaaaacatgtttgtccatgtccat |
52604779 |
T |
|
| Q |
117 |
tccatgatgtcttgtttgttgaaaaacgttgatgactttactacctgttgtgtagtggatttggacctgtaggaacaacccttttgtcctctgatgatga |
216 |
Q |
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| T |
52604780 |
tccatgatgtcttgtttgttgaaaaacgttgatgactttactacctgttgtgtagtggatttggacctgtaggaacgacccttttgtcctctgatgatga |
52604879 |
T |
|
| Q |
217 |
cgtgttgttgtagcaagaagacaagtgttttcttttgtggttgcatttgtgaacatcatcatcaagtactgccacactactactgttcttcttctctgct |
316 |
Q |
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| T |
52604880 |
cgtgttgttgtagcaagaagacaagtgttttcttttgtggttgcatttgtgaacatcatcatcaagtactgccacactgctactgttcttcttctttgct |
52604979 |
T |
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| Q |
317 |
cc |
318 |
Q |
| |
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|| |
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| T |
52604980 |
cc |
52604981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 16905712 - 16905748
Alignment:
| Q |
157 |
ctacctgttgtgtagtggatttggacctgtaggaaca |
193 |
Q |
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| T |
16905712 |
ctacctgttatgtaatggatttggacctgtaggaaca |
16905748 |
T |
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