View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_2 (Length: 651)
Name: NF1529_high_2
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 11 - 647
Target Start/End: Complemental strand, 1035820 - 1035178
Alignment:
| Q |
11 |
agcagagacatttgcagttagagttccaaatctcatccaattcaacaaacctcttgatcctaatccatgtccatttaatcgggataaaagccacctaatc |
110 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1035820 |
agcagagacatttgcagttagagttccaaatcgcatccaactcaacaaacctcttgatcctaatccatgtccatttaatcgggataaaagccatctaatc |
1035721 |
T |
|
| Q |
111 |
cacacaccaataggtccaacaatgcaagcgatccatagataagcattttcaccattcttgaattcagcaatcattaatacaccactaataccccataaca |
210 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
1035720 |
cacacaccaagaggtccaacaatgcaagcgatccacagataagcgttttcaccattcttgaattcagcaatcatcaatacaccactaacaccccataaca |
1035621 |
T |
|
| Q |
211 |
agcctaaaatcagcaaaaacaccagcataa------agtgatgtttgaagccttccacctttgacttggtcttgtctcgacaagtttcacttcctgaagt |
304 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
1035620 |
agcctaatatcagcaaaaacaccagcataactactaagtgatgtttgaaggcttccacctttgccttggtcttgtctcgactagtttcacttcctgaagt |
1035521 |
T |
|
| Q |
305 |
cacgtttagccgtgtaagaagccacctgaaacctttagctgtttctatcccaaatatgatggaaaaggcaacaagaaataaccctgcagaactccaatta |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1035520 |
cacgtttagccgtgtaagaagccacctgaaacctttagctgtttctatcccaaatatgatggaaaaggcaacaaggaataaccctgcagaactccaatta |
1035421 |
T |
|
| Q |
405 |
tttaaaagctcatcctatcaattcatccctgcatagactgcgataattacacacacatatatggaaggtatcagatttcatcgctataatacttgattat |
504 |
Q |
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| T |
1035420 |
tttaaaagctcatcctatcaattcatccctgcatagactgcgataattacacacacatatatggaaggtatcagatttcattgctataatacttgattat |
1035321 |
T |
|
| Q |
505 |
tgttacactcatcagaaactttttataagacacctgtattacaaaacttactatctgattgaaagtttatattatatagataatttgtgtaaaattttat |
604 |
Q |
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| T |
1035320 |
tgttacactcatcagaaactttttataagacacctgtattataaaacttactatctgattgaaagtttatattatatagatcatttgtgtaaaattttat |
1035221 |
T |
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| Q |
605 |
gcaaatgtaaaaacctttgatacatcattgatatatgtcgaga |
647 |
Q |
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| T |
1035220 |
gcaaatgtaaaaagatttgatacatcattgatatatgtcgaga |
1035178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 2101332 - 2101377
Alignment:
| Q |
543 |
ttacaaaacttactatctgattgaaagtttatattatatagataat |
588 |
Q |
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|||||||||| ||||| ||||||| ||||||||| ||||||||||| |
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| T |
2101332 |
ttacaaaactcactatttgattgatagtttatatcatatagataat |
2101377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 603
Target Start/End: Original strand, 50403961 - 50403997
Alignment:
| Q |
567 |
aagtttatattatatagataatttgtgtaaaatttta |
603 |
Q |
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||||||||||||||||||| |||| |||||||||||| |
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| T |
50403961 |
aagtttatattatatagattatttatgtaaaatttta |
50403997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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