View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_20 (Length: 324)
Name: NF1529_high_20
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 11027535 - 11027245
Alignment:
| Q |
16 |
ctgtgtaattgcaggattctctcacatttgttattcttttacattggtactctattgttttagtgatgataccagtgaatgtaattactttaccatgaat |
115 |
Q |
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| T |
11027535 |
ctgtgtaattgcaggattctctcacatttgttattcttttacattggtactctattgttttattgatgataccagtgaatgtaattactttaccaagaat |
11027436 |
T |
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| Q |
116 |
gtctagaacagcaaaatgatctcaactgatattttactagggttaattttttatatataaggtttggttccagtttttatatatgtgtgcatgagaggaa |
215 |
Q |
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| T |
11027435 |
gtctagaacaacaaaatgatctcaactgatattttactagggttaattttttatatataaggtttggttccagtttttatatatgtgtgcatgagaggaa |
11027336 |
T |
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| Q |
216 |
gcagggtgannnnnnncacatggagagaagctatagtataatttaagtgttttgaaatgtgatataattttaatgaattgttggaacagtat |
307 |
Q |
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| T |
11027335 |
gcagggtga-ttttttcacatggagagaagctatagtataatttaagtgttttgatatgtgatataattataatgaattgttggaacagtat |
11027245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 11042126 - 11042060
Alignment:
| Q |
39 |
acatttgttattcttttacattggtactctattgttttagtgatgataccagtgaatgtaattactt |
105 |
Q |
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| T |
11042126 |
acatttgttattcttttacgttggtactccattgttttaatgaggataccagtgaatgtaattactt |
11042060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 10993713 - 10993668
Alignment:
| Q |
39 |
acatttgttattcttttacattggtactctattgttttagtgatga |
84 |
Q |
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| T |
10993713 |
acatttgttattcatttgcattggtactcaactgttttagtgatga |
10993668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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