View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_23 (Length: 313)
Name: NF1529_high_23
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 33810703 - 33811000
Alignment:
| Q |
1 |
caagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaacccta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810703 |
caagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaacccta |
33810802 |
T |
|
| Q |
101 |
tgcatgatagcatacttgtccacatcaagcaaagacccttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810803 |
tgcatgatagcatacttgtccacatcaagcaaagacccttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagag |
33810902 |
T |
|
| Q |
201 |
cctgtgggtcagcagggacaacgctaccatctcgagccatccctttactctatacctccaaccacttcaaatcacataccaaaaccaaactccaaact |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810903 |
cctgtgggtcagcagggacaacgctaccatctcgagccatccctttaccctatacctccaaccacttcaaatcacataccaaaaccaaactccaaact |
33811000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 33870172 - 33870469
Alignment:
| Q |
1 |
caagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaacccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33870172 |
caagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaacccta |
33870271 |
T |
|
| Q |
101 |
tgcatgatagcatacttgtccacatcaagcaaagacccttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33870272 |
tgcatgatagcatacttgtccacatcaagcaaagacccttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaagag |
33870371 |
T |
|
| Q |
201 |
cctgtgggtcagcagggacaacgctaccatctcgagccatccctttactctatacctccaaccacttcaaatcacataccaaaaccaaactccaaact |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33870372 |
cctgtgggtcagcagggacaacgctaccatctcgagccatccctttaccctatacctccaaccacttcaaatcacataccaaaaccaaactccaaact |
33870469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 33830917 - 33831068
Alignment:
| Q |
40 |
agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccct |
139 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | | ||||| |
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|
| T |
33830917 |
agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
33831016 |
T |
|
| Q |
140 |
tggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttct |
191 |
Q |
| |
|
||||| ||| ||||||| |||||| ||| ||||||||||||||||||||| |
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|
| T |
33831017 |
tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttct |
33831068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 33893080 - 33893231
Alignment:
| Q |
40 |
agaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgcatgatagcatacttgtccacatcaagcaaagaccct |
139 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| | | ||||| |
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| T |
33893080 |
agaggggtaagagggcaaaggatcaaggattctaagatcacgtgcatcaatatgaaccctattcatgataacatacttgtccacatcatgaatccaccct |
33893179 |
T |
|
| Q |
140 |
tggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttct |
191 |
Q |
| |
|
||||| ||| ||||||| |||||| ||| ||||||||||||||||||||| |
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|
| T |
33893180 |
tggcctgtagcatcaaactgaatccaacttgtagaagactgtgtcttcttct |
33893231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 24409001 - 24408805
Alignment:
| Q |
1 |
caagttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaacccta |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24409001 |
caagttaagaataatagccttctcacgaccgagaataacataggggtaagagagcaagggatcaaggattctaagatcatgtgcattaatctgaacccta |
24408902 |
T |
|
| Q |
101 |
tgcatgatagcatacttgtccacatcaagcaaagacccttggccagtaccatcaaaagcaatccagcttctagaagactgtgtcttcttcttcacaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| ||| ||| |||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
24408901 |
tgcatgatagcatacttgtccacatcaatttgagaccagtggccattactatccaaagcaatccagcttccaaaagactgtgtcttcttcttcacaa |
24408805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 24410088 - 24410211
Alignment:
| Q |
5 |
ttaagaacaatagccttctcacgaccgagaatagtagaggggtaagagagcaagggatcaaggattctaagatcacgtgcattaatctgaaccctatgca |
104 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24410088 |
ttaagaataatagccttctcacgaccgagaataacagaggggtaagagagcaagggatcaaggattctaagatcacatgcattaatctgaaccctatgca |
24410187 |
T |
|
| Q |
105 |
tgatagcatacttgtccacatcaa |
128 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24410188 |
tgatagcatacttgtccacatcaa |
24410211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 24410634 - 24410676
Alignment:
| Q |
155 |
aaagcaatccagcttctagaagactgtgtcttcttcttcacaa |
197 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
24410634 |
aaagcaatccagcttccaaaagactgtgtcttcttcttcacaa |
24410676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 249
Target Start/End: Complemental strand, 24408808 - 24408777
Alignment:
| Q |
218 |
acaacgctaccatctcgagccatccctttact |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24408808 |
acaacgctaccatctcgagccatccctttact |
24408777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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