View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_31 (Length: 284)
Name: NF1529_high_31
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 37188192 - 37187927
Alignment:
| Q |
1 |
tccaatttagttcttccttttcgtgtaaggattgatttatgtcaaggaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaatacctt |
100 |
Q |
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| T |
37188192 |
tccaatttagttcttccttttcgtgtaaggattgatttatgtcaaggaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaatacctt |
37188093 |
T |
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| Q |
101 |
acttatttgctaggcattgtttagtcacgttctttctccacatgcatgtaatattgattaagtttgtgcaaagttaaggatttaatttccaactgttctt |
200 |
Q |
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| T |
37188092 |
acttatttgctaggcattgttgagtaacgttctttccccacatgcatgtaatattgattaagtttgtgcaaagttgaggatttaatttccaactgttctt |
37187993 |
T |
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| Q |
201 |
tggtgagggttttgtattattcttctcaatattatctttaaacaataacatattctccctgttaac |
266 |
Q |
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| T |
37187992 |
tggtgagggttttgtattattcttctcaatattatctttaaacaataacatattctccccgttaac |
37187927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 37893089 - 37892816
Alignment:
| Q |
1 |
tccaatttagttcttccttttcgtgtaaggattgatttatgtcaaggaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaatacctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893089 |
tccaatttagttcttccttttcgtgtaaggattgatttatgtcaaggaaaatctcaaattgggtttccctgtaacaaaatatgtctctaaagaatacctt |
37892990 |
T |
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| Q |
101 |
acttatttgctaggcattgtttagtcacgttctttctccacatgcatgtaatattgattaagtttgtgcaaagttaaggatttaatttcc-------aac |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37892989 |
acttatttgctaggcattgtttagtcacgttctttctccacatgcatgtaatattgattaagtttgtgcaaagttaaggatttaatttccaacttccaac |
37892890 |
T |
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| Q |
194 |
tgttctttggtgagggttttgtattattcttctcaatattatctttaaacaataac-atattctccctgttaac |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37892889 |
tgttctttggtgagggttttgtattattcttctcaatattatctttaaacaataacaatattctccctgttaac |
37892816 |
T |
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