View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1529_high_34 (Length: 276)

Name: NF1529_high_34
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1529_high_34
NF1529_high_34
[»] chr6 (5 HSPs)
chr6 (17-258)||(6549604-6549848)
chr6 (18-80)||(10668969-10669031)
chr6 (17-68)||(12174295-12174346)
chr6 (20-68)||(33344774-33344822)
chr6 (20-68)||(35122054-35122102)
[»] chr1 (5 HSPs)
chr1 (13-80)||(3265556-3265623)
chr1 (17-78)||(45385329-45385390)
chr1 (22-82)||(1153813-1153873)
chr1 (176-237)||(33735669-33735730)
chr1 (22-58)||(40880-40916)
[»] chr8 (5 HSPs)
chr8 (22-75)||(13580454-13580507)
chr8 (21-68)||(26835697-26835744)
chr8 (18-68)||(22930297-22930347)
chr8 (19-80)||(4350762-4350823)
chr8 (17-57)||(13236138-13236178)
[»] chr4 (4 HSPs)
chr4 (21-74)||(25790443-25790495)
chr4 (162-211)||(46443743-46443792)
chr4 (27-75)||(47059675-47059723)
chr4 (27-75)||(47082079-47082127)
[»] chr7 (2 HSPs)
chr7 (25-75)||(9429432-9429482)
chr7 (18-68)||(30095863-30095913)
[»] chr3 (1 HSPs)
chr3 (147-245)||(27538703-27538799)
[»] chr5 (1 HSPs)
chr5 (20-64)||(12263755-12263799)
[»] chr2 (1 HSPs)
chr2 (18-62)||(16647943-16647987)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 6549848 - 6549604
Alignment:
Q  17 tagggcaccattttataaggggcaccaagattattatttttatttaatagtttgtattaaatagtttaactccatttgcttaattctattaaaaatatgt 116  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6549848 tagggcaccattttataatgggcaccaagattattatttttatttaatagtttgtattaaatagtttaactccatttgcttaattctattgaaaatatgt 6549749  T
Q  117 ttttgcataaccttgatttttgaggaatctttttgcaacaaaagataca---agaaatattatattcaaataattaaaaagatacaattttattgatttt 213  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||| || |||||||||||     
T  6549748 ttttgcataaccttaatttttgaggaatctttttgcaacaaaagatacaagaagaaatattatatttaaataattaaaaagatataactttattgatttg 6549649  T
Q  214 gccaagacaccaaaatttttaggaccgatcctcaagatgtattat 258  Q
    |||||||||| |||| | |||| ||||| | | ||||||||||||    
T  6549648 gccaagacacaaaaaatcttagaaccgaccttaaagatgtattat 6549604  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 10669031 - 10668969
Alignment:
Q  18 agggcaccattttataaggggcaccaagattattatttttatttaatagtttgtattaaatag 80  Q
    ||||||||||||| | ||||||||||| ||||||||||||| ||| ||||| |||||| ||||    
T  10669031 agggcaccatttttttaggggcaccaaaattattatttttacttattagttagtattatatag 10668969  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 12174295 - 12174346
Alignment:
Q  17 tagggcaccattttataaggggcaccaagattattatttttatttaatagtt 68  Q
    |||||||||||||| |||| |||||||| ||||||||||||| ||| |||||    
T  12174295 tagggcaccattttttaagaggcaccaaaattattatttttacttagtagtt 12174346  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 33344774 - 33344822
Alignment:
Q  20 ggcaccattttataaggggcaccaagattattatttttatttaatagtt 68  Q
    |||||||||| || ||||||||||| ||||||||||||| ||| |||||    
T  33344774 ggcaccatttaattaggggcaccaaaattattatttttacttagtagtt 33344822  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 35122102 - 35122054
Alignment:
Q  20 ggcaccattttataaggggcaccaagattattatttttatttaatagtt 68  Q
    |||||||||| || ||||||||||| ||||||||||||| ||| |||||    
T  35122102 ggcaccatttaattaggggcaccaaaattattatttttacttagtagtt 35122054  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 3265623 - 3265556
Alignment:
Q  13 agcatagggcaccattttataaggggcaccaagattattatttttatttaatagtttgtattaaatag 80  Q
    |||| ||||||||||||||||| ||| ||||| ||||||||||||| ||||||||| |||||||||||    
T  3265623 agcacagggcaccattttataaagggaaccaaaattattatttttacttaatagttagtattaaatag 3265556  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 45385390 - 45385329
Alignment:
Q  17 tagggcaccattttataaggggcaccaagattattatttttatttaatagtttgtattaaat 78  Q
    |||| ||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||    
T  45385390 taggacaccattttataaggggtatcaaaattattatttttatttagtagtttgtattaaat 45385329  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 1153873 - 1153813
Alignment:
Q  22 caccattttataaggggcaccaagattattatttttatttaatagtttgtattaaatagtt 82  Q
    |||||| || || |||||||||  ||||||||||||||||| ||||| |||||||||||||    
T  1153873 caccatcttttagggggcaccacaattattatttttatttagtagttagtattaaatagtt 1153813  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 33735730 - 33735669
Alignment:
Q  176 tattcaaataattaaaaagatacaattttattgattttgccaagacaccaaaatttttagga 237  Q
    |||| |||||||||||| |  |||||||||||| |||  |||||||||||||| ||||||||    
T  33735730 tattaaaataattaaaagggcacaattttattgttttacccaagacaccaaaaattttagga 33735669  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 40916 - 40880
Alignment:
Q  22 caccattttataaggggcaccaagattattattttta 58  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  40916 caccattttattaggggcaccaaaattattattttta 40880  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 13580507 - 13580454
Alignment:
Q  22 caccattttataaggggcaccaagattattatttttatttaatagtttgtatta 75  Q
    ||||||||| | ||||||||||| ||||||||||||| ||||||||| ||||||    
T  13580507 caccatttttttaggggcaccaaaattattatttttacttaatagttagtatta 13580454  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 26835744 - 26835697
Alignment:
Q  21 gcaccattttataaggggcaccaagattattatttttatttaatagtt 68  Q
    |||||||||| | ||||||||||| ||||||||||||| |||||||||    
T  26835744 gcaccatttttttaggggcaccaaaattattatttttacttaatagtt 26835697  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 22930297 - 22930347
Alignment:
Q  18 agggcaccattttataaggggcaccaagattattatttttatttaatagtt 68  Q
    ||||||||||||| | ||||||||||| ||||| ||||||| |||||||||    
T  22930297 agggcaccattttttcaggggcaccaaaattataatttttacttaatagtt 22930347  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 4350823 - 4350762
Alignment:
Q  19 gggcaccattttataaggggcaccaagattattatttttatttaatagtttgtattaaatag 80  Q
    |||||||| ||| | || |||||||| ||||||||||||||||| ||||| |||||| ||||    
T  4350823 gggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtattatatag 4350762  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 13236138 - 13236178
Alignment:
Q  17 tagggcaccattttataaggggcaccaagattattattttt 57  Q
    |||||||||||| | ||||||||||||| ||||||||||||    
T  13236138 tagggcaccattgtttaaggggcaccaaaattattattttt 13236178  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 25790443 - 25790495
Alignment:
Q  21 gcaccattttataaggggcaccaagattattatttttatttaatagtttgtatt 74  Q
    |||||||||| || |||||||||| ||||||||||||||||||||||| |||||    
T  25790443 gcaccatttttta-ggggcaccaaaattattatttttatttaatagttagtatt 25790495  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 46443792 - 46443743
Alignment:
Q  162 tacaagaaatattatattcaaataattaaaaagatacaattttattgatt 211  Q
    ||||||||| | |||||| |||| ||||||||||||||| ||||||||||    
T  46443792 tacaagaaaaaatatatttaaatgattaaaaagatacaactttattgatt 46443743  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 47059675 - 47059723
Alignment:
Q  27 ttttataaggggcaccaagattattatttttatttaatagtttgtatta 75  Q
    |||| ||||||||||||| ||||||||||||| ||| ||||| ||||||    
T  47059675 ttttttaaggggcaccaaaattattatttttacttattagttagtatta 47059723  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 47082127 - 47082079
Alignment:
Q  27 ttttataaggggcaccaagattattatttttatttaatagtttgtatta 75  Q
    |||| ||||||||||||| ||||||||||||| ||| ||||| ||||||    
T  47082127 ttttttaaggggcaccaaaattattatttttacttattagttagtatta 47082079  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 9429482 - 9429432
Alignment:
Q  25 cattttataaggggcaccaagattattatttttatttaatagtttgtatta 75  Q
    |||||| | ||||||||||| |||| |||||||||||||||||| ||||||    
T  9429482 catttttttaggggcaccaaaattagtatttttatttaatagttagtatta 9429432  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 30095913 - 30095863
Alignment:
Q  18 agggcaccattttataaggggcaccaagattattatttttatttaatagtt 68  Q
    ||||||||||||| | ||||||||||| ||||||||||||| ||| |||||    
T  30095913 agggcaccatttttttaggggcaccaaaattattatttttacttagtagtt 30095863  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 27538799 - 27538703
Alignment:
Q  147 ttttgcaacaaaagatacaagaaatattatattcaaataattaaaaagatacaattttattgattttgccaagacaccaaaatttttaggaccgatcct 245  Q
    ||||||||||||| |||||||||| |  ||||| ||||| |||||| | |||||||| |||| ||   |||||||||||||| | ||||||||||||||    
T  27538799 ttttgcaacaaaaaatacaagaaaaaa-atattgaaatagttaaaatggtacaattt-attgtttcatccaagacaccaaaaatcttaggaccgatcct 27538703  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 12263799 - 12263755
Alignment:
Q  20 ggcaccattttataaggggcaccaagattattatttttatttaat 64  Q
    ||||||||||| | ||||||||||| ||||||||||||| |||||    
T  12263799 ggcaccatttttttaggggcaccaaaattattatttttacttaat 12263755  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 16647987 - 16647943
Alignment:
Q  18 agggcaccattttataaggggcaccaagattattatttttattta 62  Q
    ||||||||||||| | ||||||| ||| |||||||||||||||||    
T  16647987 agggcaccatttttttaggggcatcaaaattattatttttattta 16647943  T

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