View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1529_high_38 (Length: 261)
Name: NF1529_high_38
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1529_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3951648 - 3951407
Alignment:
| Q |
1 |
gggtgagtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaattccatctggca |
100 |
Q |
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| T |
3951648 |
gggtgagtagcagaatgtatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaattccatccggca |
3951549 |
T |
|
| Q |
101 |
atgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgttaaaactcataaaagttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3951548 |
atgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaactctaagttgttaaaactcataaaagttt |
3951449 |
T |
|
| Q |
201 |
actggttaaaatccctccgagctacacgtgtgacgaagtttt |
242 |
Q |
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| T |
3951448 |
actggttaaaatccctccgagctacacgtgtgacgaagtttt |
3951407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 4 - 197
Target Start/End: Original strand, 4027231 - 4027424
Alignment:
| Q |
4 |
tgagtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaattccatctggcaatg |
103 |
Q |
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||||||||||||| || ||||||||||||||| ||| ||| ||| ||||| |||||||| |||||||| |||| || | |||||||| |||||||| |
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| T |
4027231 |
tgagtagcagaacatacttcacatacatgatttgtacaagagtaccaaaatggacgcatttcgaagttagattttctagcaacaattccatatggcaatg |
4027330 |
T |
|
| Q |
104 |
ccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgttaaaactcataaaag |
197 |
Q |
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| T |
4027331 |
ccttacttccagaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaattctaagttgttaaaactcataaaag |
4027424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 201
Target Start/End: Original strand, 3990103 - 3990297
Alignment:
| Q |
6 |
agtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaattccatctggcaatgcc |
105 |
Q |
| |
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|||||||| || | ||||||||||||||||||| || |||||||||||||||||||||| | |||||| |||| || | ||||||| |||| |||||| |
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| T |
3990103 |
agtagcagcacatttctcacatacatgatttatgccagagtcccataatggccgcatttcaaatttagattttctagcaacaattccagctggaaatgcc |
3990202 |
T |
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| Q |
106 |
ttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgttaaaactcataaaagttta |
201 |
Q |
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| T |
3990203 |
ttacttccagaatccctgtattgtgtctgaggaaatgcaaatcaatagaaacagaatcagatgcaattctaag-tgttaagactcataaaagttta |
3990297 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 4 - 197
Target Start/End: Original strand, 4012932 - 4013125
Alignment:
| Q |
4 |
tgagtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaattccatctggcaatg |
103 |
Q |
| |
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|||||||| | || ||| |||||||||||| | |||| ||||||||||| |||||||||| |||||| ||| || || | |||||||| | |||||| |
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| T |
4012932 |
tgagtagccgcacatatttcacatacatgaataatactagagtcccataatcgccgcatttctaagttagctgtcctagcaacaattccatattgcaatg |
4013031 |
T |
|
| Q |
104 |
ccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgttaaaactcataaaag |
197 |
Q |
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| T |
4013032 |
ccttacttccggaatgcctgtattgtctctgacgaaatgaaaattaacagaagcagaatcagaggcaattctaagtcattaaaactcataaaag |
4013125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 4004518 - 4004715
Alignment:
| Q |
4 |
tgagtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttcttgcgaaaattccatctggcaatg |
103 |
Q |
| |
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|||||| ||| || ||| ||||||||||||||| |||| || | | |||||||| ||||||| ||| ||||||| || | ||||||||| |||||| |
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| T |
4004518 |
tgagtaccagcacatatttcacatacatgatttgtaccagaggctcggaatggccgtgtttccgaattatatgttctagcaatcattccatcttgcaatg |
4004617 |
T |
|
| Q |
104 |
ccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgttaaaactcataaaagttta |
201 |
Q |
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|||||||||| ||||||||||||| ||||||||||| |||| | ||||||||||||||| | ||||| ||||||||||||||||||||| ||||| |
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| T |
4004618 |
ccttacttccggaatgcctgtattgtctctgaggaaatgcaaataagcagaagcagaatcagggacaattttaagttgttaaaactcataaatgttta |
4004715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 3822214 - 3822265
Alignment:
| Q |
152 |
agaagcagaatcagaggcaat--tctaagttgttaaaactcataaaagttta |
201 |
Q |
| |
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||||||||||||||||| ||| |||||| |||||||||||||||||||||| |
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| T |
3822214 |
agaagcagaatcagaggtaatattctaagatgttaaaactcataaaagttta |
3822265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 13400089 - 13400278
Alignment:
| Q |
4 |
tgagtagcagaacgtatctcacatacatgatttataccgaagtcccataatggccgcatttccgagttagatgttct---tgcgaaaattccatctggca |
100 |
Q |
| |
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|||||||||| || ||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || | |||||||| ||||| |
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| T |
13400089 |
tgagtagcagcacatatttcacatacattatttataccaaagtcccataatggccgcatttccgagttagatgttctagcagcaacaattccatatggca |
13400188 |
T |
|
| Q |
101 |
atgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaattctaagttgttaaaactc |
190 |
Q |
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|||||||| || || ||||||||||||| ||||||||||| |||| ||||||||| ||| |||||||| | |||||||||| ||||| |
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| T |
13400189 |
atgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagctcaattagaggcaaatataagttgttataactc |
13400278 |
T |
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