View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1529_high_41 (Length: 255)

Name: NF1529_high_41
Description: NF1529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1529_high_41
NF1529_high_41
[»] chr8 (2 HSPs)
chr8 (140-237)||(3484298-3484396)
chr8 (19-78)||(3484436-3484493)
[»] chr2 (1 HSPs)
chr2 (141-231)||(23002920-23003010)
[»] chr3 (2 HSPs)
chr3 (19-78)||(41779250-41779310)
chr3 (140-237)||(41779357-41779448)


Alignment Details
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 3484396 - 3484298
Alignment:
Q  140 tccatcaagagggagagaaagaaaacccaaaacccagaaattatacaccaa-taactaaaatgacaattgatgttcattgtacagtcggaacgtgagaa 237  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||| | |||||||||  |||||||    
T  3484396 tccatcaagagggagagaaagaaaacccaaaacccaaaaattatacaccaacgaaccaaaatgacaattgatgttcatggaacagtcggacggtgagaa 3484298  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 3484493 - 3484436
Alignment:
Q  19 caaacaagtcttaagcctatttcaattttc-tttcccatcgtcatgtttcatgaaaaagtt 78  Q
    ||||||| |||||||||||||||||||| | ||||||||||   |||||||||||||||||    
T  3484493 caaacaactcttaagcctatttcaatttccttttcccatcg---tgtttcatgaaaaagtt 3484436  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 23003010 - 23002920
Alignment:
Q  141 ccatcaagagggagagaaagaaaacccaaaacccagaaattatacacc-aataactaaaatgacaattgatgttcattgtacagtcggaacg 231  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||||| || ||| ||||||||||| ||| ||||| |||||||| |||||    
T  23003010 ccatcaagatggagagaaataaaacccaaaa-ccagaaattatacaccaaagaaccaaaatgacaatcgatattcatggtacagtcagaacg 23002920  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 41779250 - 41779310
Alignment:
Q  19 caaacaagtcttaagcctatttcaattttcttt-cccatcgtcatgtttcatgaaaaagtt 78  Q
    ||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  41779250 caaacaactcttaagcctatttcaatttcctttccccatcgtcgtgtttcatgaaaaagtt 41779310  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 41779357 - 41779448
Alignment:
Q  140 tccatcaagagggagagaaagaaaacccaaaacccagaaattatacaccaa-taactaaaatgacaattgatgttcattgtacagtcggaacgtgagaa 237  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||  ||| |||| |||||||||||||||| |  ||||||||  |||||||    
T  41779357 tccatcaagagggagagaaagaaaacccaa-------aaattatacaccaacgaaccaaaacgacaattgatgttcatggcgcagtcggacggtgagaa 41779448  T

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